PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000236041
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 770aa    MW: 88151.2 Da    PI: 8.5819
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000236041genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS328.21.6e-1001925442353
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++lL+ cA+avs++d++ +++lL++++++asp+gd  qRla++f+++L+ar+ ++ +++  ++ +s  ++++ ++ l+++++   ++P+ +++ l 
  MDP0000236041 192 QNLLILCAQAVSTNDFRTTSELLKQVRQHASPNGDGSQRLAHFFANGLEARMGGTDTGTQ-KFYTSLVKRSSAVDMLKSYQVHLSACPFKRMCVLF 286
                    789***************************************************555555.566666667899*********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     N++Il+ +e+++++Hi+Df+i +G+QWp L+q L++R++gpp+lRiTg++ p++g   +e +eetg+rLa+++e+++vpfe+n+++++ +e+++l
  MDP0000236041 287 KNKMILKMAEKATTLHIVDFGILYGFQWPFLIQHLSKRRGGPPKLRITGIEVPQPGfrPAEWIEETGRRLARYCERFNVPFEYNAIASQXWESIQL 382
                    *******************************************************9*99**************************9999******* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    e+L+++++E+laVn++l+ ++llde+v+++ +rd vL l+++++P+++v++  + ++n++ F++rf eal +ys+l+d+++ ++pr++eer   E 
  MDP0000236041 383 EDLKTERNEVLAVNCMLRFKNLLDETVEVNCPRDXVLXLIRRMKPDIFVHSIINGSYNAPFFVTRFREALFHYSSLYDAFDINIPRDNEERLRFES 478
                    ************************************************************************************************ PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                    e+ gre++nv+aceg er+er et+++W+ r ++aG++p++l+++ +k  k  ++  + + + v++
  MDP0000236041 479 EFYGREAMNVIACEGVERVERPETYKQWQVRCMRAGLQPLQLDQDLVKILKDKVKAWYHKDFVVDQ 544
                    ************************************************999999999977788876 PP
2GRAS168.65e-52543727155340
           GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                     + ++etg+rLak++e  +vpfe+n  +ak++e++++eeL+vk++E+laVn+ ++ ++llde+v ++s+rd+vL+ ++s++P++++++  + ++n+
  MDP0000236041 543 DQDIQETGHRLAKYCEXYNVPFEYNG-IAKKWEAIQYEELNVKRDEVLAVNCLFRFKNLLDETVVVNSPRDAVLNXIRSMNPDIFIHSVINGSYNA 637
                    5789**********************.7******************************************************************** PP

           GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                    + +++ f eal+++salfd+++++l+re+  r + E+e+lgr +vn +aceg+er+ r et+++W+ r ++aGFk++pl+ + +++ ++ 
  MDP0000236041 638 PFYVTPFREALSHFSALFDMFDTNLSREDPMRLMFEEEFLGRXVVNTIACEGSERVVRPETYKQWQVRNMRAGFKQLPLNRELMNKLRAN 727
                    ********************************************************************************9999887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.988165545IPR005202Transcription factor GRAS
PfamPF035145.5E-98192544IPR005202Transcription factor GRAS
PROSITE profilePS5098526.607546741IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MTSVGDRRHV GGGQRLDDML QGSSVEEFVA QNIYTDSDSI LQFQRGLEEA SKFLPKSTQL  60
LVDLESNTVS PEVKASVPMV TVKKEKSERK NSPNGSKGRK NREREDVDLE EGRSSKQSAV  120
YIEKTEESEL SEMFDKVLLS TGGNNESQCG NVAFKNEASK TLQPGQPQGS NGNGGKARGK  180
KQGKKKETVD LQNLLILCAQ AVSTNDFRTT SELLKQVRQH ASPNGDGSQR LAHFFANGLE  240
ARMGGTDTGT QKFYTSLVKR SSAVDMLKSY QVHLSACPFK RMCVLFKNKM ILKMAEKATT  300
LHIVDFGILY GFQWPFLIQH LSKRRGGPPK LRITGIEVPQ PGFRPAEWIE ETGRRLARYC  360
ERFNVPFEYN AIASQXWESI QLEDLKTERN EVLAVNCMLR FKNLLDETVE VNCPRDXVLX  420
LIRRMKPDIF VHSIINGSYN APFFVTRFRE ALFHYSSLYD AFDINIPRDN EERLRFESEF  480
YGREAMNVIA CEGVERVERP ETYKQWQVRC MRAGLQPLQL DQDLVKILKD KVKAWYHKDF  540
VVDQDIQETG HRLAKYCEXY NVPFEYNGIA KKWEAIQYEE LNVKRDEVLA VNCLFRFKNL  600
LDETVVVNSP RDAVLNXIRS MNPDIFIHSV INGSYNAPFY VTPFREALSH FSALFDMFDT  660
NLSREDPMRL MFEEEFLGRX VVNTIACEGS ERVVRPETYK QWQVRNMRAG FKQLPLNREL  720
MNKLRANVKL GTTVISWLMK METGCYKDGR AGLSTIPRVG YRLGLAMHAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-431915205328GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.161650.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028945142.10.0uncharacterized protein LOC103422728
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A498IRE00.0A0A498IRE0_MALDO; Uncharacterized protein
STRINGXP_008385103.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]