PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000234335 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 319aa MW: 35864 Da PI: 10.7874 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.1 | 3.7e-28 | 257 | 315 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+y+WrKYGqK++kgs +pr+ Y+C+s gCp++k+ver+ edp+++++tY+geH+h+ MDP0000234335 257 SDEYSWRKYGQKPIKGSLYPRGCYKCSSIrGCPARKRVERCLEDPSMLVVTYQGEHKHS 315 69************************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.7E-30 | 244 | 316 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.165 | 251 | 317 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-24 | 254 | 316 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.8E-32 | 256 | 316 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-24 | 258 | 314 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MKGSYAPHXL KMHHMPPRLS TSLHALQSAT AMVDSAASKR DQIGHLYXLN KAWMAVLGTV 60 LSAETEVAVF KFKRVLSLLS HGRGRVRKLK KNLNPLPLPH NIFLDGPNYS DISPKPLQLL 120 PPTFPKTPHK EKVFLGSPVP KTKTLQQHQE ERTKLQFHPQ RVKYRDEMVF SGRNSGINLA 180 FDRSSSSCKT STTSARSFMS CLSIGGCAAT TGRDSFRLIG GVPRVPGQIS QQQRRKLKEK 240 RSYKVPAISD KISDIPSDEY SWRKYGQKPI KGSLYPRGCY KCSSIRGCPA RKRVERCLED 300 PSMLVVTYQG EHKHSQSAW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-16 | 254 | 315 | 12 | 72 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028945980.1 | 1e-175 | probable WRKY transcription factor 74 | ||||
Swissprot | Q93WU6 | 1e-60 | WRK74_ARATH; Probable WRKY transcription factor 74 | ||||
TrEMBL | A0A498IJZ3 | 1e-170 | A0A498IJZ3_MALDO; Uncharacterized protein | ||||
STRING | XP_009364483.1 | 1e-172 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28650.1 | 1e-54 | WRKY DNA-binding protein 74 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000234335 |
Publications ? help Back to Top | |||
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