PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000234120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | G2-like | ||||||||
Protein Properties | Length: 425aa MW: 47536.4 Da PI: 9.5126 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.3 | 4.8e-30 | 167 | 221 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGse.kAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++F++a+e+LGG++ +AtPk +l+lm+vkgLt++hvkSHLQ+YR+ MDP0000234120 167 PRLRWTPELHRCFLQAIERLGGHKtEATPKLVLQLMDVKGLTISHVKSHLQMYRS 221 8*********************9747****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-30 | 163 | 222 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.966 | 163 | 224 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-15 | 165 | 221 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-22 | 167 | 221 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.5E-9 | 168 | 220 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MITRYKRNGY VESFSKHAKF VIELGLGEHG HPEEKFFART NHPSALPALA KYSIQHNNSS 60 PTPNQELEIM REKEKGQGEA VVASSLLVWY RGKELERRRW VQGRCTRDKQ KAQAAGGERE 120 RGKYRIVKST FIKGSGEDPG WWEKKMTTSS CSARNGAVRQ YVRSKVPRLR WTPELHRCFL 180 QAIERLGGHK TEATPKLVLQ LMDVKGLTIS HVKSHLQMYR SMRGDPIIRQ DRVQTRKLHS 240 FEEAEDDGCV EEVNGLSFYP SSKPTRESDS QVICNPRRSK RARTETMGSN ISEGLQQQQC 300 SKGGIYETVS NPYSFDDYVL ALGIKENPHP SAFKIALQES DFLKVATLPE AGGAHVEDHH 360 EAGQCELSLS LSLHQPSSHK SNASSSDFSG AISSSYSRPN SKDCSASSSG NRNLNLNLSI 420 ALCGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-16 | 168 | 223 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-16 | 168 | 223 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-16 | 168 | 223 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-16 | 168 | 223 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-16 | 168 | 223 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-16 | 168 | 223 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-16 | 168 | 223 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-16 | 168 | 223 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-16 | 168 | 223 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-16 | 168 | 223 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-16 | 168 | 223 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-16 | 168 | 223 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.30219 | 0.0 | bud| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018501963.1 | 0.0 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A498HI58 | 0.0 | A0A498HI58_MALDO; Uncharacterized protein | ||||
STRING | XP_008340524.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5539 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 2e-29 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000234120 |