PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000233616

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 830aa MW: 88474.5 Da PI: 6.4065

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000233616	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00054	647	669	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg + + k+ L+rH+ H MDP0000233616 647 YTCSICGLRLKLKERLERHLEWH 669 9******************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.305	647	674	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	649	669	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence Send to blast
MASDFSGVMA NSIDDDAERP ARAASISAGR PWVDPAVKMH RSNTDALSDR VHEENIGAEY 60 GEYEYGSDLH RNSNPGIGRI GGKITETLPT QRNGFNIKHG LTNYSSSKST NADPRLKTAP 120 GIATRNSGGL SSSWKNSEEE EFMWDDMNSR LTDHGPPDIS SNSRKDHWAS DDSEKLGFGA 180 DMDTSANPTE QKDLSALGQR MSSPWTLQDS IGIDRLTPSG TPVISSVHSE RYASSLSGLS 240 TSGDSSVARM GSRAQVASSR IGTSSLGFNA AAGPTGALGK QQLQSVRAAS PSGQSSMHQY 300 SPSPTSAVHP RHHSQSLADQ DFAEEPLPIP TPNVRLGSKA KSQPQDLSSS IPDIQSRHKY 360 PFRQQPDSIE SESFGHTKKP HVPQVSTFST PSTVGDSIPD LSNVLAAESS GQLNTSSLLA 420 AVMKTGILSD KSITCSLPNL NRRDMGHIPS QSGVQPPLQS GPSPTLALPG PKVASAPSSG 480 HLSGENSPAS SNVSQKKVAH LPIPPSQPPS SLDGSASASS TVVSNASDPI SNLLSSLVAK 540 GLISASKSES PTPVPSQKLT ELHNKGLGAP ASKSVSVSPV SVSVSPSRPV TSQTDASLPE 600 PVAKTSAALP QSTKTEIQNL IGIAFKPDII REFHPAVIDE LFNDLPYTCS ICGLRLKLKE 660 RLERHLEWHA LKNPEGSGSV MASRKWYPDL TSWVAGRTVP PLVPEAINSI DEPNEMMDID 720 EPIVPADENQ CACVICGDIF EDFYCQERDE WMFKGASYMS IPSAAGKMET TEESVLKGPI 780 VHANCTVESS LSDSHVKLML RSYLLLFGRN QMLSARSSKL KRQTPCIPNS

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence Send to blast

MASDFSGVMA NSIDDDAERP ARAASISAGR PWVDPAVKMH RSNTDALSDR VHEENIGAEY  60
GEYEYGSDLH RNSNPGIGRI GGKITETLPT QRNGFNIKHG LTNYSSSKST NADPRLKTAP  120
GIATRNSGGL SSSWKNSEEE EFMWDDMNSR LTDHGPPDIS SNSRKDHWAS DDSEKLGFGA  180
DMDTSANPTE QKDLSALGQR MSSPWTLQDS IGIDRLTPSG TPVISSVHSE RYASSLSGLS  240
TSGDSSVARM GSRAQVASSR IGTSSLGFNA AAGPTGALGK QQLQSVRAAS PSGQSSMHQY  300
SPSPTSAVHP RHHSQSLADQ DFAEEPLPIP TPNVRLGSKA KSQPQDLSSS IPDIQSRHKY  360
PFRQQPDSIE SESFGHTKKP HVPQVSTFST PSTVGDSIPD LSNVLAAESS GQLNTSSLLA  420
AVMKTGILSD KSITCSLPNL NRRDMGHIPS QSGVQPPLQS GPSPTLALPG PKVASAPSSG  480
HLSGENSPAS SNVSQKKVAH LPIPPSQPPS SLDGSASASS TVVSNASDPI SNLLSSLVAK  540
GLISASKSES PTPVPSQKLT ELHNKGLGAP ASKSVSVSPV SVSVSPSRPV TSQTDASLPE  600
PVAKTSAALP QSTKTEIQNL IGIAFKPDII REFHPAVIDE LFNDLPYTCS ICGLRLKLKE  660
RLERHLEWHA LKNPEGSGSV MASRKWYPDL TSWVAGRTVP PLVPEAINSI DEPNEMMDID  720
EPIVPADENQ CACVICGDIF EDFYCQERDE WMFKGASYMS IPSAAGKMET TEESVLKGPI  780
VHANCTVESS LSDSHVKLML RSYLLLFGRN QMLSARSSKL KRQTPCIPNS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.8905	0.0	fruit\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017192004.2	0.0	polyadenylation and cleavage factor homolog 4
TrEMBL	A0A498IEZ8	0.0	A0A498IEZ8_MALDO; Uncharacterized protein
STRING	XP_008386987.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4369	3	3

Link Out ? help Back to Top
Phytozome	MDP0000233616