PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000233235
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 784aa    MW: 87042.2 Da    PI: 6.2319
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000233235genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.4e-21109164156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  MDP0000233235 109 RKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 164
                    7999************************************************9877 PP
2START208.52.6e-652785232206
                    HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG................. CS
          START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke................. 70 
                    + ++a++el k+a+a+ep+W +s+    e++n+de++++f  +        +s+ea+r++gvv+ +l++lv +++d                    
  MDP0000233235 278 IVNQAMEELKKMATAGEPLWIRSVetgrEILNYDEYIKEFNIEVPsnarpkRSIEASRETGVVFVDLPRLVHSFMDEVHtstfheaaiyksycfvl 373
                    56789***********************************77544999************************************************ PP

                    ....CT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEE CS
          START  71 ....qWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSg 151
                        qW+e+++    ka+t++vi++g      ga+qlm+aelq+l+plvp R+++fvR+++ql+ ++w+ivdvS+d  ++   ++s+v+++++pSg
  MDP0000233235 374 aginQWKEMFPcmisKAATVDVINNGegdnrnGAVQLMFAELQMLTPLVPtREVYFVRCCKQLSPEQWAIVDVSIDKVEDSI-DASLVKCRKRPSG 468
                    ********************************************************************************87.9************ PP

                    EEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 152 iliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                    ++ie++sngh+kv+wveh ++++++++ ++r +v+s+la+ga++wvatlq qce+
  MDP0000233235 469 CIIEDESNGHCKVIWVEHLECQKSTIQTMYRTIVNSSLAFGARHWVATLQLQCER 523
                    *****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-2395160IPR009057Homeodomain-like
SuperFamilySSF466899.84E-2199167IPR009057Homeodomain-like
PROSITE profilePS5007118.269106166IPR001356Homeobox domain
SMARTSM003891.5E-18108170IPR001356Homeobox domain
PfamPF000461.3E-18109164IPR001356Homeobox domain
CDDcd000866.60E-17113164No hitNo description
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
PROSITE profilePS5084838.962268526IPR002913START domain
SuperFamilySSF559611.24E-29270523No hitNo description
CDDcd088752.25E-106272522No hitNo description
SMARTSM002341.5E-61277523IPR002913START domain
PfamPF018529.6E-49278523IPR002913START domain
Gene3DG3DSA:3.30.530.205.1E-4297313IPR023393START-like domain
Gene3DG3DSA:3.30.530.205.1E-4408516IPR023393START-like domain
SuperFamilySSF559611.51E-15552770No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MGVDMSNNPP TSRTKDFFAS PALSLSLAGI FRDAGAAAVA SREVEEGDEG SGGGGSAAVG  60
SVRRREDTAE ISSENSGPAR SRSEDEFDAE GEHDEDDADG DNKNKKKKRK KYHRHTTEQI  120
REMEALFKES PHPDEKQRQQ LSKQLGLAPR QVKFWFQNRR TQIKAIQERH ENSLLKGEME  180
KLRDENKAMR EQINKSCCPN CGTATTSRDA TLTTEEQQLR IENARLKSEV EKLRAALVKY  240
PPGSSSPSCS AGQDQENRSS LDFYTGIFGI EKSRIMEIVN QAMEELKKMA TAGEPLWIRS  300
VETGREILNY DEYIKEFNIE VPSNARPKRS IEASRETGVV FVDLPRLVHS FMDEVHTSTF  360
HEAAIYKSYC FVLAGINQWK EMFPCMISKA ATVDVINNGE GDNRNGAVQL MFAELQMLTP  420
LVPTREVYFV RCCKQLSPEQ WAIVDVSIDK VEDSIDASLV KCRKRPSGCI IEDESNGHCK  480
VIWVEHLECQ KSTIQTMYRT IVNSSLAFGA RHWVATLQLQ CERLVFFMAT NVPMKDSTGV  540
ATLAGXKSIL KLAQRMTTSF CRAIGASSYH TWTKISSKTG DDIRIASRKN LNDPGEPLGV  600
ILCAVSSVWL PISPHVLFDF LRDETRRNEW DIMLNGGPAQ TIANLSKGQD RGNAVTIQSM  660
KSKEKSMWIL QDTCINSYES MVVYAPVDTT GMQSVMTGCG ASNIAILPSG FSILPDGLES  720
RPMVITSRQE DRSSEGGTLL TAAFQVLTNS SPTGKLTMES VESANTLISC TLRNIKASLQ  780
CEDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109KKKKRK
2104110KKKKRKK
3106110KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.167200.0bud| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing trichomes.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353605.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2-like
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A498J3X10.0A0A498J3X1_MALDO; Uncharacterized protein
STRINGXP_009353605.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]