PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000233192 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 353aa MW: 39937.6 Da PI: 6.9483 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 17.5 | 7.2e-06 | 287 | 314 | 28 | 55 |
HHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRake 55 +++ LA+++gL+ +q+ +WF N+R ++ MDP0000233192 287 AQKLALAESTGLDLKQINNWFINQRKRH 314 56778********************885 PP | |||||||
2 | ELK | 38 | 3.6e-13 | 210 | 231 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgy g+LkqEF+ MDP0000233192 210 ELKVQLLRKYSGYMGTLKQEFM 231 9********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 8.7E-18 | 64 | 108 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.6E-20 | 66 | 105 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.9E-24 | 117 | 168 | IPR005541 | KNOX2 |
Pfam | PF03791 | 9.0E-20 | 122 | 167 | IPR005541 | KNOX2 |
SMART | SM01188 | 4.9E-7 | 210 | 231 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.79 | 210 | 230 | IPR005539 | ELK domain |
Pfam | PF03789 | 6.2E-10 | 210 | 231 | IPR005539 | ELK domain |
SMART | SM00389 | 4.7E-4 | 232 | 321 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.04E-10 | 232 | 326 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.13E-8 | 233 | 317 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 235 | 319 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.0E-10 | 250 | 313 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 9.28 | 288 | 317 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 292 | 315 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence Send to blast |
MEGGISRNSG NLGFLDSSLA AALMNSETRT TSSSSYSKXF LSLPLINNIP NLQSHPHEXI 60 DQEMSVKAKI MAHPLYPQLL SAYVNCLKVG APAEVXARLE QVCSANNSEA AKRSSIRGGD 120 NHPDAALDQF MEAYCEMLTK YEEELTEPFK EAMLFLSNID TQLKALTLHS NSSSDSAIVS 180 SSDFVGQSGS PKEAXAIKEC SMDPQAEDRE LKVQLLRKYS GYMGTLKQEF MKKKKNGKLP 240 EEARHQLLDW WCRHYKWPYP SVQISYSSTS LQCKLRKDAT IHHAIEAQKL ALAESTGLDL 300 KQINNWFINQ RKRHWKPXED MQFVLMDPTL HHHHHPHXYM DNAICNPFSM DCX |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.1561 | 1e-109 | cell culture |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008342121.2 | 0.0 | homeobox protein knotted-1-like LET6 isoform X1 | ||||
Swissprot | P46608 | 1e-102 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A498HEV2 | 0.0 | A0A498HEV2_MALDO; Uncharacterized protein | ||||
STRING | XP_008342121.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2039 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G62360.1 | 6e-92 | KNOX/ELK homeobox transcription factor |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000233192 |
Publications ? help Back to Top | |||
---|---|---|---|
|