PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000233007
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CPP
Protein Properties Length: 529aa    MW: 56640.5 Da    PI: 8.6577
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000233007genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.11.7e-13120159242
            TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                    ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C+N+ e+
  MDP0000233007 120 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCCNNVEN 159
                    89**************************.********9875 PP
2TCR51.12.7e-16204243140
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  MDP0000233007 204 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 243
                    589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.6E-15119159IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.442120244IPR005172CRC domain
PfamPF036383.7E-10121156IPR005172CRC domain
SMARTSM011148.4E-20204245IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.9E-13207242IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MGEGDGADLA PKKAQSDAAA GTATASSSSS MNDVPAKKLA RQLDFTGVXS APASVAVPEL  60
PKPPLXTEAV PPSLPXPPVV SMPVPVLVPQ QPHTLKLVKP ESPKSRPRPN VDAKDGTPKK  120
QKQCNCKHSR CLKLYCECFA SGIYCDGCNC VNCCNNVENE GARNDAIEAT LERNPNAFRP  180
KIASSPHGAK DTREEAGEVL ILGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCMDCK  240
NFEGSEERQA LFHGDHGNNM VYLQQAANAA ITGAIGSSGY ASSPPVSKKR RGQEFFGPTA  300
KDPSIHRIGQ FQQGNNIRAP APSPQSSVPV NRLGGTAGLG PSKFTYRSLL ADIIQPQDLK  360
ELCSVLVVVA EEAAKTLADT MFMSAASPNG LMGDGNTSSQ LPNGQGMTEV YAEQERIVLM  420
KFRDCLNRLI TFGEIKGKWI TFLIWTSYKT KCSSLARREA ETQKDQHSNS STNARIDSWN  480
PQGPISNGVA RTAVSLAPKT TTSQTVTAAV SALSKTPSHP ENRDGRPKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-3112125311132Protein lin-54 homolog
5fd3_B1e-3112125311132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.303425e-40bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008337364.20.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SL701e-165TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBLA0A498HY770.0A0A498HY77_MALDO; Uncharacterized protein
STRINGXP_008337364.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.21e-145Tesmin/TSO1-like CXC domain-containing protein