PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000232923 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | G2-like | ||||||||
Protein Properties | Length: 323aa MW: 35154.3 Da PI: 8.4495 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.4 | 3.3e-33 | 47 | 101 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl MDP0000232923 47 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 101 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.884 | 44 | 104 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-32 | 45 | 102 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.48E-17 | 46 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.7E-26 | 47 | 102 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-7 | 49 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.6E-10 | 133 | 158 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Pfam | PF14379 | 4.2E-10 | 188 | 212 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MYHAKKFSTA SLVPHKPQSS QELANVGVVS GGSSVKSPTP SGGGSGKQRL RWTSDLHDRF 60 VDAITQLGGP DRATPKGVLR VMGVPGLTIY HVKSHLQKYR LAKYLPESPA DGSKDEKKGS 120 GDSLSCSDSS PGVQINEALR MQMEVQKRLH EQLELIQQLH SLEVKVFVXH FSSPGPEFGS 180 GFGNMDWVQR QLQMRIEAQG KYLQKIIEEQ QKFGGSLKAS EALPSAEEKQ KPAHLETMGD 240 ASAAPSSPRK KQRVDEGLAD GCATSNLPLK ADQKNEFVGQ WDREVYGSDG GYGFGLQTEF 300 KERDGGAAQK APMELDPLCG SKQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-23 | 46 | 104 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-23 | 46 | 104 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-23 | 46 | 104 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-23 | 46 | 104 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-23 | 46 | 104 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-23 | 46 | 104 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-23 | 46 | 104 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-23 | 46 | 104 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12338 | 0.0 | bud| cell culture| fruit| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR828552 | 1e-124 | FR828552.1 Rosa hybrid cultivar mRNA for putative MYB transcription factor (myb1 gene), cultivar Yellow Island. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009345372.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
Refseq | XP_009347649.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
Refseq | XP_009347650.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
Swissprot | Q9SJW0 | 3e-66 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A498IFZ3 | 0.0 | A0A498IFZ3_MALDO; Uncharacterized protein | ||||
STRING | XP_009345372.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009347649.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009347650.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13013 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-56 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000232923 |