PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000232803

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YB

Protein Properties

Length: 191aa MW: 20668.1 Da PI: 5.8342

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000232803	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	169.4	4.1e-53	27	129	1	98
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse.....asdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 vreqdrflPian+srimkk+lP n+ki+kdake+vq+cvsefisf+tse asdkcqrekrktingddllwa+atl fedy++plkvyl+kyr MDP0000232803 27 VREQDRFLPIANISRIMKKALPPNGKIAKDAKEIVQDCVSEFISFITSEydavlASDKCQREKRKTINGDDLLWAMATLDFEDYIDPLKVYLAKYR 122 69********************************************9888889************************************* PP NF-YB 92 elegekk 98 e+eg++k MDP0000232803 123 EVEGDTK 129 **975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.8E-51	24	141	IPR009072	Histone-fold
SuperFamily	SSF47113	5.83E-37	30	139	IPR009072	Histone-fold
Pfam	PF00808	7.3E-24	33	102	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.7E-16	61	79	No hit	No description
PRINTS	PR00615	1.7E-16	85	103	No hit	No description
PRINTS	PR00615	1.7E-16	104	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MAEAPVSPGG VSHESGGDGS GSPRSNVREQ DRFLPIANIS RIMKKALPPN GKIAKDAKEI 60 VQDCVSEFIS FITSEYDAVL ASDKCQREKR KTINGDDLLW AMATLDFEDY IDPLKVYLAK 120 YREVEGDTKG SGKGGDSSSK KDVQPSPNPQ ISHQGSFSQG GNYSNSQVIS CSSSPLTQLF 180 SEIIPSFKKV C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-43	27	123	1	92	Transcription factor HapC (Eurofung)
4g92_B	2e-43	27	123	1	92	Transcription factor HapC (Eurofung)
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.14659	1e-160	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008359657.1	1e-102	nuclear transcription factor Y subunit B-1-like isoform X2
Swissprot	Q8VYK4	4e-76	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A498IA82	1e-115	A0A498IA82_MALDO; Uncharacterized protein
STRING	XP_008359656.1	1e-100	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2545	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	3e-69	nuclear factor Y, subunit B8

Link Out ? help Back to Top
Phytozome	MDP0000232803

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]