PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000232760
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family BES1
Protein Properties Length: 894aa    MW: 100318 Da    PI: 6.4463
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000232760genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822137.91e-42802231139
         DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.....eeaeaagssasaspe 91 
                    gg++r ++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++  s+       ++a ++ ss+ +sp+
  MDP0000232760  80 GGARRCRPIEEKERTKLRERQRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSQGArlagvNSAPVTSSSQMVSPH 175
                    6899*****************************************************************954444334564555555566669999 PP

         DUF822  92 sslqsslkssalaspvesysaspksssfpspssldsislasaasllpv 139
                    ++ +++  +s+ +sp e  ++  k +  ps s +d  s+a ++s++ v
  MDP0000232760 176 TPASLKGGTSSYQSPGELNACNIKGVYLPSLSPYDLPSSARSQSSSLV 223
                    999999999**************************9988766555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.5E-3782201IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514456.43E-178260700IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.2E-196262705IPR013781Glycoside hydrolase, catalytic domain
PfamPF013734.7E-102269689IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-65300314IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-65321339IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-65343364IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060347355IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008427.4E-7426435IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007505.4E-65436458IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-65509528IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-65543559IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-65560571IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-65578601IPR001554Glycoside hydrolase, family 14
PRINTSPR008427.4E-7581591IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007505.4E-65618640IPR001554Glycoside hydrolase, family 14
PRINTSPR008427.4E-7669683IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008427.4E-7684698IPR001371Glycoside hydrolase, family 14B, plant
SuperFamilySSF1172813.27E-7798861No hitNo description
Gene3DG3DSA:2.120.10.801.5E-6799862IPR015915Kelch-type beta propeller
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0005515Molecular Functionprotein binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MASGLQKLIT SEEDDDEEME MDVKEEDDGD EEDDEDGEKH VDAAQMMVGV DGEMPTRSNN  60
NNRFQQHHQF QEQVGTPGGG GARRCRPIEE KERTKLRERQ RRAITARILA GLRRHGNYNL  120
RVRADINDVI AALAREAGWV VLPDGTTFPS KSQGARLAGV NSAPVTSSSQ MVSPHTPASL  180
KGGTSSYQSP GELNACNIKG VYLPSLSPYD LPSSARSQSS SLVGEGACQT ESHPLIGGSM  240
DNIGDKQIVD IPLKLQERDF SSTANIPVYI MLPLGVINMK CELVDPDGLL KQLRVLKSVN  300
VDGVMVDCWW GIVEGHAPQE YNWNGYRRLF QMVRELKLKL QVVMSFHECG GNVGDDVCIP  360
LPHWVAEIGR SNPDIFFTDR EGRRNPECLS WGIDKERVLR GRTAVEVYFD CMRSFRVEFD  420
EYFKDGNISM IQVGLGPCGE LRYPSCPVKH GWRYPGVGEF QCYDQYLLKS LRKAAEAKGH  480
SFWGRGPXNA GSYNSRPNET SFFSEGGDYD GYYGRFFLNW YSRVLVDHGD RVLSLAKLAF  540
DGTCIAAKLS GLHXWYKTAS HAAELTAGFY NSCNRDGYAP IMTMLKKHEA TVKLACTELH  600
VLDQHEEFQE ALGDSEGLFW QVLNAAWDVC VPVSSENALA CHDRISYNKI LDNSKPLTDP  660
DGRHLSSFTY LRLSPLLMER QNFMEFERFV RRMHAIDVLQ TIFPTRQSYY FLNTMSPDSS  720
TSKSRPAKSS HLSLLFFNDV LQGVHTLLLW LRTRDSFRSI LCFARTSIIL SQPLPDLKPQ  780
WNLIILPQVQ QKTYCVHGLP PRIMKRKGMG FEVPGKKVYL LGGCGWCEDA TDEVYSYDAS  840
LNAWGEASPL STARFTLTCA VTAHVHAVVY EPSMGHGSTR NLTWFRAGEV QQLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wds_A1e-14226669512443Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.149091e-163stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338860.20.0beta-amylase 7 isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A498JEY70.0A0A498JEY7_MALDO; Beta-amylase
STRINGXP_008338860.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108833339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]