PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000232623
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 550aa    MW: 61600.1 Da    PI: 6.0076
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000232623genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind92.64.5e-29201582102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT....................... CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks....................... 74 
                    Fl+k+y++++d++++ ++sws+ +nsfvv++  ef++++LpkyFkh+nf+SFvRQLn+Y    ++    +  +                       
  MDP0000232623  20 FLNKTYDMVDDHSTDAVVSWSNGNNSFVVWNVPEFSRDLLPKYFKHNNFSSFVRQLNTYVVFVIHWVPLSLGDhxvigkprrkkdireknmkgevk 115
                    9**********************************************************755554444333334789999***********99999 PP

                    ...............XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
   HSF_DNA-bind  75 ...............kekiweFkhksFkkgkkellekikrkks 102
                                   +++ weF+++ F +g+k+ll+++ r+k 
  MDP0000232623 116 lfcfxgciihgfrkxDPDRWEFANEGFLRGQKHLLKTVSRRKP 158
                    99999888877765449***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-331378IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.67E-271586IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.8E-4516156IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-142043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.8E-2620156IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-145870IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-147183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.67E-27124156IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-33126151IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MEGVEDAASV INSANAPPPF LNKTYDMVDD HSTDAVVSWS NGNNSFVVWN VPEFSRDLLP  60
KYFKHNNFSS FVRQLNTYVV FVIHWVPLSL GDHXVIGKPR RKKDIREKNM KGEVKLFCFX  120
GCIIHGFRKX DPDRWEFANE GFLRGQKHLL KTVSRRKPAH VQSHQXPPPQ XQSSQVGACV  180
EVVNXGLEEE VERLKRDKNT LMQELVRLRQ QQQATDNQLH NVGQRMQGME QRQQQMMSFL  240
AKAMHSPGFL SQLVQHQNEN NRRITGSNKK RRLPRQXDEI LVGNLGSKVL DGQMVKYQPS  300
MNEAAKAMLX QILKMNTSPK LEPSLINPDA FLIDNVPSNX TDSRNTSSRN LGVTLSEVPP  360
ISAEXXMPEE SRFPVSCHST AISEIQSSPY AVSNSVKETQ XLEEXMHNFQ QDTVIPELTR  420
MQGIVSESNV EIPNANFIGS EIGNAGYMGM SAGLDGRLPT DILPFSPEPD ADALPDGVSS  480
LPGINDIFWE QFLTASPPPG DTDEISFSSD DGVAVNQDLQ LGKENGWEKS QHMNHITEQM  540
QLLASGSRTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-171815627129Heat shock factor protein 1
5d5v_B6e-171815627129Heat shock factor protein 1
5d5v_D6e-171815627129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.162854e-62bud| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8532531e-122AB853253.1 Pyrus pyrifolia mRNA, microsatellite: TsuENH235.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008390927.20.0heat stress transcription factor A-1-like isoform X1
RefseqXP_008390928.20.0heat stress transcription factor A-1-like isoform X1
SwissprotQ84T611e-151HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A498JRN80.0A0A498JRN8_MALDO; Uncharacterized protein
STRINGXP_008390927.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-108heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]