PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000232004
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WOX
Protein Properties Length: 399aa    MW: 43924 Da    PI: 7.8692
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000232004genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-1757117257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  MDP0000232004  57 KPRWNPKPEQIRILEAIFNSgVVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 117
                    89*****************99*************************************995 PP
2Wus_type_Homeobox1116.6e-3656118264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k
      MDP0000232004  56 PKPRWNPKPEQIRILEAIFNSGVVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
                        689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-737116IPR009057Homeodomain-like
PROSITE profilePS5007110.38253118IPR001356Homeobox domain
SuperFamilySSF466891.33E-1153120IPR009057Homeodomain-like
SMARTSM003896.0E-855122IPR001356Homeobox domain
CDDcd000865.50E-856118No hitNo description
PfamPF000464.3E-1557117IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPADCS THHQWQHDIS PSLVSNSCHR PSSSSVGGCE ERSPEPKPRW  60
NPKPEQIRIL EAIFNSGVVN PPRDEIRKIR AQLQEYGQVG DANVFYWFQN RKSRSKHKLR  120
NLHNLPKQQQ THHRHTHLPI STPISAATTL NIINAAAPSS SSSSSEKSSP KAPNNKAFSM  180
GFSTHDVSII SPIASVNQST NFFQPHHPHH NEVLPESPFF FPVHQGNINP NLTQGFCLSE  240
LANVVHVPNH EQTNNNNIGP CTSLLLSEIM NHGGISRKEY HHQEDQIMAM KNVDNQQHLT  300
SPTTAVAAST NPTVAVPSPM FHNIQGSVGE AGAMAPGGPA KSTVFINDVA FEVGAGPFNV  360
REAFGDDAVL IHSSGQPVLT NEWGLTLHSL HHGSFYYLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028966185.10.0WUSCHEL-related homeobox 9-like
TrEMBLA0A498IVT40.0A0A498IVT4_MALDO; Uncharacterized protein
STRINGXP_008383666.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.17e-63homeobox-3