PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000231993

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

WRKY

Protein Properties

Length: 325aa MW: 36519.4 Da PI: 10.3002

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000231993	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.4	9.4e-31	264	321	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp ++++tYegeH+h+ MDP0000231993 264 DEFSWRKYGQKPIKGSPYPRGYYKCSSIrGCPARKHVERCFEDPAMLIVTYEGEHKHS 321 99*********************9988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.6E-13	216	260	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	4.7E-33	250	322	IPR003657	WRKY domain
PROSITE profile	PS50811	29.379	257	323	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	258	322	IPR003657	WRKY domain
SMART	SM00774	7.8E-37	262	322	IPR003657	WRKY domain
Pfam	PF03106	8.7E-26	264	320	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEEVEAANRA AVGSCHRVLN LLCKPKPWKN LQVETEVAVX KFKRVLSLLS HGRGRVRKLK 60 KNLNPPPFPQ NIFSDGPNYS DISPKPLQLL PPIFPKTPHT QKXFLGNPVP DANLKLPLQI 120 PKTXTMXQHQ EEREKLQFXP QQVKYQSEMV FSGIDSGINL AFDRSSSSFN PSMTSARSFM 180 SCLSVGDGDE VNTGRDSFRL IDGVPWVSGQ SSQQQRRCTG VVENGSVNCG GSGKCHXPKK 240 RKLRVKRTFK VPAISDKTSD IPPDEFSWRK YGQKPIKGSP YPRGYYKCSS IRGCPARKHV 300 ERCFEDPAML IVTYEGEHKH SQSAR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-20	260	320	12	71	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008345720.2	0.0	probable WRKY transcription factor 74
Swissprot	Q93WU6	2e-88	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A498K3L1	0.0	A0A498K3L1_MALDO; Uncharacterized protein
STRING	XP_008345720.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2637	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	2e-89	WRKY DNA-binding protein 74

Link Out ? help Back to Top
Phytozome	MDP0000231993

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]