PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000231668
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 342aa    MW: 37168.1 Da    PI: 9.5159
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000231668genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.5e-31270327359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D y+WrKYGqK++kgs++pr+YY+C+s+ gC ++k+ver+ +dp+++++tYeg+Hnh+
  MDP0000231668 270 DDYSWRKYGQKPIKGSPYPRGYYKCSSErGCLARKHVERAVDDPTMLIVTYEGDHNHS 327
                    99*************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-15220266IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.3E-32257327IPR003657WRKY domain
PROSITE profilePS5081130.687263329IPR003657WRKY domain
SuperFamilySSF1182902.22E-26265327IPR003657WRKY domain
SMARTSM007742.7E-37268328IPR003657WRKY domain
PfamPF031061.5E-26270326IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MALELMMGLI DSFAAKGEEN AVKEAASAGI QSVEKFISLI SQHHHQSLSS NTEDATEYKA  60
VADMAVTKFR KVISLLDKGR TGHARFRKAP VTQIPTPSIS EPHDQETEQP SVFRTEQSSA  120
FKVYCPTPVV XLPPLPQNPH PKTTPVMLTK GIGCAERKMD SAAAATISFS PSAPKTAANS  180
FISSLTAGDA AEQSISSGFQ FTNMSQSSSG RPPLSSSSLK RKCSSVDNVS RLRCGSTTGR  240
CHCSKTRKLK VKRVIRVPAI SMKLADIPPD DYSWRKYGQK PIKGSPYPRG YYKCSSERGC  300
LARKHVERAV DDPTMLIVTY EGDHNHSLCV TDPTATLILE SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-222663281576Probable WRKY transcription factor 4
2lex_A7e-222663281576Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.165750.0fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393777.20.0probable WRKY transcription factor 7 isoform X1
SwissprotQ9STX01e-101WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A498HV750.0A0A498HV75_MALDO; Uncharacterized protein
STRINGXP_008393777.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-80WRKY DNA-binding protein 7