PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000231315
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 557aa    MW: 61188.2 Da    PI: 7.9661
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000231315genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.56.2e-28273323151
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                    k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQ
  MDP0000231315 273 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQ 323
                    68************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.59E-12270324IPR009057Homeodomain-like
PROSITE profilePS5129412.215270330IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-23271323IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-23273323IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MASSPSELSL DCKPHSYSML LKSFGDLQAS HLHDQSQTQK LEEFLSRLEE ERLKIDAFKR  60
ELPLSMQLLT TAVEASRQQL QAYRTNNIQG QNRPVLEEFI PLKHSNSEGS EIPTNATSDK  120
ANWMTSAQLW SQATDHNPNA TSKPQSTITT GPKETDIGFX VSPKLGLETK QHRSYGGGAF  180
LPFSKDRSPT XRPLPELALA SPENNKSEIV LEDKTNHHEN GNINSSSAAG NCNEQGKLLG  240
AGGINNSSEG QNGQTTTTAG AGATTTPTQT HRKARRCWSP DLHRRFVNAL QMLGGSQVAT  300
PKQIRELMKV DGLTNDEVKS HLQAKMQARK TYACLPFVLF TSXLPFLIVL KDKRGQLLEL  360
EIQCHLHPKN PNLFSNKKNF YHSSCIGKEE KYRLHTRRPS PSPHAGGGPT PQLVVLGGIW  420
VPPEYATAAH NGSAALYSPH PASHAPPHYC ATPMPQDFYA TQQQQQQLHH HTLQHQLHVY  480
RTSTASHTQS SPESDGRGAG DRSESIEDGK SESGSWKGTE SGDHVNMNGG DQRNGGLTAR  540
RSEDGEDSNG SQITLKF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.259850.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269|PubMed:25132385}.
UniprotTISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269|PubMed:25132385}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2950573e-47GU295057.1 Malus x domestica clone Florina BAC 36I17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008337342.20.0myb family transcription factor EFM-like
SwissprotQ9ZQ856e-87EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A498HSH20.0A0A498HSH2_MALDO; Uncharacterized protein
STRINGXP_008337342.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.15e-73G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]