PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000230511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 215aa MW: 24837.1 Da PI: 6.6408 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.1 | 1.8e-19 | 60 | 113 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ MDP0000230511 60 KRKLTAEQVNLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKN 113 5689************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 118.4 | 3.9e-38 | 59 | 150 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+l++eqv+lLE +F +e+kLe+e+K +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ ++e++rLe+e+++L+++l+e MDP0000230511 59 KKRKLTAEQVNLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKEHENTVAEKCRLESEMSKLKDQLSE 150 9****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.1E-17 | 57 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.57E-16 | 59 | 115 | No hit | No description |
SuperFamily | SSF46689 | 7.27E-18 | 59 | 123 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.293 | 59 | 114 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-16 | 60 | 113 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 61 | 121 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.8E-5 | 85 | 94 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 89 | 112 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.8E-5 | 94 | 110 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MATNNHQVVE DDHHMLLISH LYSASDVYTQ IVPPQGASKP ARRRRKKRKG GEAGGVGLKK 60 RKLTAEQVNL LELNFGNEHK LESEKKDRLA SELGLDPRQV AVWFQNRRAR WKNKKLEEEY 120 STLKKEHENT VAEKCRLESE MSKLKDQLSE AEMEIQRLLE RVDHGGPSNS PSSSFSMEAI 180 DPPFLGEFGV EEYDDVFYMP QNNYIPGMEW MNLYM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 47 | RRRKKR |
2 | 42 | 48 | RRRKKRK |
3 | 42 | 60 | RRRKKRKGGEAGGVGLKKR |
4 | 46 | 61 | KRKGGEAGGVGLKKRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008338720.2 | 1e-142 | homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | O23208 | 6e-79 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A498KPY7 | 1e-158 | A0A498KPY7_MALDO; Uncharacterized protein | ||||
STRING | XP_008338720.1 | 1e-160 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-69 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000230511 |
Publications ? help Back to Top | |||
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