PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000230456
Common NameHSF7
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 324aa    MW: 36364.4 Da    PI: 6.2709
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000230456genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.31.2e-33111022102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    F++k+y++++d+++++li+w + +nsfvv+d+  f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+ ++F +g+++ll+++
  MDP0000230456  11 FVMKTYQMVNDSTTDNLITWGRANNSFVVVDPVVFSQRLLPAYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFASEWFLRGQTHLLRNV 97 
                    9********************999*****************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                     r+k+
  MDP0000230456  98 ARRKH 102
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.8E-507100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.2E-368100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.02E-328100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.8E-2911100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-181134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-184961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-186274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEESNNVIAP FVMKTYQMVN DSTTDNLITW GRANNSFVVV DPVVFSQRLL PAYFKHNNFS  60
SFVRQLNTYG FRKVDPDKWE FASEWFLRGQ THLLRNVARR KHMGKSSSSN SNANFLQAKH  120
EELDGEDIIR EISGLKQEQK ALEQEIGDMN RRLDATERRP QQMMAFLNKV AEDPEILPRM  180
MLEKDRATAA QLGEKKRRVM MMASTSSSSS TKDDGTVAVI SSSPEAGFEM ESFNRYPXPP  240
EAQTASDWLR QRWVVDRVHA IQNPYNMNPT ALGHGAENTR NSGNSAYGYG NGSGGGPGGE  300
VGFFTEVEAS PPPPYPFSLL EGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-22810026129Heat shock factor protein 1
5d5v_B1e-22810026129Heat shock factor protein 1
5d5v_D1e-22810026129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.168730.0bud| fruit| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315934.10.0heat stress transcription factor C-1
SwissprotQ9LV529e-84HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLD9ZJ310.0D9ZJ31_MALDO; HSF domain class transcription factor
STRINGXP_008386483.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-85heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]