PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000230429
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YB
Protein Properties Length: 488aa    MW: 53959.8 Da    PI: 6.3651
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000230429genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.67.7e-5825120297
          NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                    reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe+yveplk+yl+kyre+egek
  MDP0000230429  25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGEK 120
                    89********************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.9E-5519125IPR009072Histone-fold
SuperFamilySSF471132.48E-4027131IPR009072Histone-fold
PfamPF008083.1E-273094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.6E-215876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.6E-217795No hitNo description
PRINTSPR006155.6E-2196114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MADSDNDSGG PNDRSQAQSG ELSAREQDRF LPIANVSRIM KKALPANAKI SKDAKETVQE  60
CVSEFISFVT GEASDKCQRE KRKTINGDDL LWAMTTLGFE EYVEPLKIYL QKYREMEGEK  120
STMGGGGGGR EKDSSSGGGG AASGGGGGGG ISSGISGGGY NGGYGGMVMM GHHNHHQGHV  180
RGSGGGYQQN HMAMGGGGGR KSGGSSGGGN GGASVVSVIV GKEDYRAKYK CIYLKLIERE  240
REEKGDWRDR GGAAGRRGDE WMWVRWIYMD FKKDFDEGRD DENLDHDQHR KFINILKKCL  300
ELFEKDEQRK DTLDKLRVHI TGYLYKEDAN IVDKLLSCSF ERNIKELDIT LGRLFQSDWD  360
SMQNYYCLSR MSFLDAKSLT TLSLRSALPL SICLELPPIF EKDDNINLVS SSLKFLEVKH  420
CNARVIFPDE FRNTFSSPLP GLILSLQLMA SNPPRTETEY FDLLNSLCWV APSAKTIFPQ  480
LIDPLLVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A6e-4522115497NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.144134e-99bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4495022e-94AM449502.2 Vitis vinifera contig VV78X221419.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498J8I81e-153A0A498J8I8_MALDO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-65nuclear factor Y, subunit B3