PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000229611
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 403aa    MW: 45729.6 Da    PI: 6.229
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000229611genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.4e-20146199356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k++++t +q++ Le+ Fe +++++ e++++LAkklgL+ rqV vWFqNrRa++k
  MDP0000229611 146 KKRRLTLDQVHMLEKSFETDNKLKPERKTQLAKKLGLQPRQVAVWFQNRRARWK 199
                    56689************************************************9 PP
2HD-ZIP_I/II132.12e-42145236192
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    ekkrrl+ +qv++LE+sFe+++kL+perK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ +++ ke+++L++++ 
  MDP0000229611 145 EKKRRLTLDQVHMLEKSFETDNKLKPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDTLLSDYDSIIKENQKLKSQVV 236
                    69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF022191.0E-13154IPR003171Methylenetetrahydrofolate reductase
Gene3DG3DSA:3.20.20.2208.8E-14154IPR029041FAD-linked oxidoreductase-like
SuperFamilySSF517301.65E-8249IPR029041FAD-linked oxidoreductase-like
SuperFamilySSF466891.63E-19132203IPR009057Homeodomain-like
PROSITE profilePS5007117.67141201IPR001356Homeobox domain
SMARTSM003891.5E-19144205IPR001356Homeobox domain
CDDcd000866.05E-19146202No hitNo description
PfamPF000463.4E-17146199IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-21148208IPR009057Homeodomain-like
PRINTSPR000317.7E-6172181IPR000047Helix-turn-helix motif
PROSITE patternPS000270176199IPR017970Homeobox, conserved site
PRINTSPR000317.7E-6181197IPR000047Helix-turn-helix motif
PfamPF021832.5E-17201242IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006555Biological Processmethionine metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004489Molecular Functionmethylenetetrahydrofolate reductase (NAD(P)H) activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAAHGPAFCD ITWGAGGSTA DLTLDIANKM QNLICVETMM HLTCTNILVD KIDHAPFPSQ  60
KPSTPEERRS DLLANRRRRR RRIGFLQGGG GNMLFLGNPD HVFRGPRSMM GLMDQESSRR  120
RPFFSSSSSQ DELFDEECYD EQLPEKKRRL TLDQVHMLEK SFETDNKLKP ERKTQLAKKL  180
GLQPRQVAVW FQNRRARWKT KQLERDYDLL KSSYDTLLSD YDSIIKENQK LKSQVVSINE  240
KLGGKEQASS TKAAAFAADD HDDEKRDPLL PTGNQLVEVV PITSLQYSCS VKVEDRLSSG  300
SGGSAVVDEA EGPQPMDNSD SYNFPNNIHN YYSHDHDTHH HHHHHQYTAP HDHVEHHRRG  360
VHSEEDDGSD DGQCYFSDVF AAAAAEQQAA QEEGVSLNWW GWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17581RRRRRRR
2193201RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.115230.0cell culture| fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6787880.0JQ678788.1 Malus x domestica HB-1 (hb-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315708.10.0homeobox-leucine zipper protein HAT5-like
TrEMBLA0A222U9V30.0A0A222U9V3_MALDO; Homeodomain leucine zipper protein
STRINGXP_008367440.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-54homeobox 1