PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000229285
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 425aa    MW: 47134.4 Da    PI: 5.339
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000229285genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18196246155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    ++++GVr+++ +g+W+AeIrdp     r  r +lg+f+taeeAa  +++a+ +l+g
  MDP0000229285 196 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTFDTAEEAAVVYDNAAIQLRG 246
                    59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.74E-32196254No hitNo description
PROSITE profilePS5103223.578197254IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-21197254IPR016177DNA-binding domain
SMARTSM003803.6E-37197260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-30197254IPR001471AP2/ERF domain
PfamPF008475.2E-11197246IPR001471AP2/ERF domain
PRINTSPR003674.0E-10198209IPR001471AP2/ERF domain
PRINTSPR003674.0E-10220236IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MTKTPPTGEL VKAEPHVSCH VTRIPNSKNK FFLQPLSHLG PHPHLTLAPF GSPSLTGPTS  60
PRVTHPCPNY AAPDMNHPAV KYTQHRSHTK MVANSAETAE FELVRPRVVR ITVTDGNATD  120
SSSDDEAEES SFPGARHRVK RFVNEITIES CSNRDTDSAV WRSRTTRTGR KRPAGKSGAL  180
ARGRRDLKAI AAPAGKKFRG VRQRPWGKWA AEIRDPLRRV RLWLGTFDTA EEAAVVYDNA  240
AIQLRGPDAL TNFAPPAAIS PPDVKPEVSS GFYSGDESHN HLCSPTSVLR YPSPSNEEAE  300
SPCPKQVPEA TEARNVREYS CVSESLSEFS DYTSFETFIP DDMFNFETSI PDYFEETSLR  360
DDVGILKEEI PDFGNLKEEM TDFGNLGEMF ADSVWDFGFG SSPWCTDDYF QDIGDFFSSD  420
PLVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-20195253362ATERF1
3gcc_A9e-20195253362ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028948852.10.0ethylene-responsive transcription factor CRF2-like
TrEMBLA0A498JPC10.0A0A498JPC1_MALDO; Uncharacterized protein
STRINGXP_009336252.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-58cytokinin response factor 2