PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000228838
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 278aa    MW: 31260.9 Da    PI: 8.7951
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000228838genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.89.2e-28109169159
                    ---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dgy+WrKYGqK+ k+++  pr+Y+rC++a +Cpvkkkv+r+ ed ++++ tYegeHnh+
  MDP0000228838 109 VKDGYQWRKYGQKVTKDNPsSPRAYFRCSFApRCPVKKKVQRCIEDDSILVATYEGEHNHD 169
                    58**************997369********99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-28100170IPR003657WRKY domain
PROSITE profilePS5081123.089104171IPR003657WRKY domain
SuperFamilySSF1182901.96E-23106169IPR003657WRKY domain
SMARTSM007743.8E-32109170IPR003657WRKY domain
PfamPF031063.8E-23110169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDAHTLNKQK VVDSVPEDLQ RLRKENETLR FLLQVMTAKC STLEQQQLRX MHIQQQPCDH  60
RHIMTTNINS AIMSKRQRTD EHRYQFPASH DKTSQFLVKT DSKDNSLIVK DGYQWRKYGQ  120
KVTKDNPSSP RAYFRCSFAP RCPVKKKVQR CIEDDSILVA TYEGEHNHDA INDSALFGQF  180
SCSHKNIIVP VNFPSSGIGT NNDVINISPS PPEPVTLDLS LSGSSNQENG GLGSPQSMVS  240
SRRVEDYVAS LTKDPDFTQT LVAAVARSIA RPANRPNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-191081691372WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008347492.20.0probable WRKY transcription factor 40
SwissprotQ6IEK58e-38WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLA0A498J9J20.0A0A498J9J2_MALDO; Uncharacterized protein
STRINGXP_008347492.10.0(Malus domestica)
STRINGXP_008357270.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-39WRKY DNA-binding protein 40