PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000228304 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 362aa MW: 40817.7 Da PI: 6.8433 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33.6 | 7.9e-11 | 171 | 247 | 2 | 59 |
--SS-EEEEEEE-..............-TT-S..S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKe..............vkgse..fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg +WrKYGqK+ ++++ +Y+rCt + gC+++k+v++ +++p++ +itY geH+++ MDP0000228304 171 EDGQAWRKYGQKDnpqsfisknqiwmcIEKNSvaIQGAYFRCTRKydqGCKATKQVQQIQDNPRTYQITYIGEHTCR 247 89**********74444422222222222222113458*****998899**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.4E-16 | 159 | 247 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-13 | 168 | 247 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.2E-23 | 170 | 248 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.543 | 170 | 244 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.3E-12 | 171 | 247 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MSERIAQSKI SPVKVKILES SVCVRERTEE LRLGTEQKQS IVERMGTNHK RLIEELLEGR 60 KTAVELQSLL HKPFGDRESA EELLMKIMTT FTESLSVLTA SNGHEDHQSA ASGEVYQVKP 120 EPSHVEHSHC GDRSSEGSGE SPKTQAFKDR RGSYKRRKTS QSWKVISTKI EDGQAWRKYG 180 QKDNPQSFIS KNQIWMCIEK NSVAIQGAYF RCTRKYDQGC KATKQVQQIQ DNPRTYQITY 240 IGEHTCRTMI KASPMIIGPD LWPSQTVSSE SGSPHRQNPN FFGSSSSSIP IVKQEDSKVG 300 TPSDVTDNNV WLGLKDHLDF SEPTGICVSS NENVVSNMQW DDMVKSINFE CDINFDEGFD 360 AV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-18 | 165 | 247 | 3 | 69 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.23768 | 0.0 | fruit| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017187222.2 | 0.0 | WRKY DNA-binding transcription factor 70 | ||||
TrEMBL | A0A498JI37 | 0.0 | A0A498JI37_MALDO; Uncharacterized protein | ||||
STRING | XP_008369379.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4700 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 5e-31 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000228304 |