PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000227056

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 868aa MW: 97816.2 Da PI: 6.5566

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000227056	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	286.6	6.8e-88	404	727	2	337
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL+ cA+avs++d++ +++lL++++++asp+gd qRla++f+++L+ar+ ++ +++ ++ +s ++++ ++ l+++ + ++P+ +++ l MDP0000227056 404 XNLLILCAQAVSTNDFRTTSELLKQVRQHASPNGDGSQRLAHFFANGLEARMGGTDTGTQ-KFYTSLXKRSSAVDXLKSYXVHLSACPFKRMCXLF 498 689*************************************************666655.566666667899******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 N++Il+ +e+++++Hi+Df+i +G+QWp L+q L++R +gpp+lRiTg++ p++g +e +eetg+rL ++ + + +e+++l MDP0000227056 499 KNKMILKMAEKATTLHIVDFGILYGFQWPXLIQHLSKRXGGPPKLRITGIEVPQPGfrPAEWIEETGRRLXRYSS-------------QXWESIQL 581 ****************************************************999*********99765.............468999 PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 e+L+++++E+laVn++l+ ++llde+v+++ +rd+vL+l+++++P+++v++ + ++n++ F++rf eal +ys+l+d+++ ++pr++eer E MDP0000227056 582 EDLKTERNEVLAVNCMLRFKNLLDETVEVNCPRDAVLNLIRKMKPDIFVHSIINGSYNAPFFVTRFREALFHYSSLYDAFDINIPRDNEERLRFES 677 ********************************************************************************************** PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337 e+ gre++nv+aceg er+er et+++W+ r ++aG++p++l+++ +k MDP0000227056 678 EFYGREAMNVIACEGVERVERPETYKQWQXRCMRAGLQPLQLDQDLVKXL 727 *****************************************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	50.586	377	744	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-85	404	727	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 868 aa Download sequence Send to blast
MDHPTFNGSP DYLNGFSIDD LAFSPDSTQF SNLTNEYQFX QFSPDLNFMD NHFSLPPDFE 60 QGSLSLPTTV SVGGADSSSD DSDFSEAXFK YVNQILLEEN IEKKPCMFYD PLGLRVTEKS 120 FYDVLGQQYP FSPNQQPLHI NPNVESPGGN NSGSCSDCSG SNSSSSPGTS NSIDPQWVGD 180 SGEQKPSFPQ XSLPNDSPFQ FNSHSSSQLS VPLENRMTSX GDGRHVDDML QGSSVEEFVA 240 QNIFTDSDSI LQFQRGLEEA SKFLPKSTQL LVDLESNTVS PEVKASVPMV VTVKKEKXEX 300 KNSXNGSKGR KNREREDVDL EEGRSSKQSA VYIEKTEESE LSEMFDKVLL STGGNNESQC 360 GNVAFKNEAS KTLQPSGQPQ GSNGNGGKAR GKKQGKKKET VDLXNLLILC AQAVSTNDFR 420 TTSELLKQVR QHASPNGDGS QRLAHFFANG LEARMGGTDT GTQKFYTSLX KRSSAVDXLK 480 SYXVHLSACP FKRMCXLFKN KMILKMAEKA TTLHIVDFGI LYGFQWPXLI QHLSKRXGGP 540 PKLRITGIEV PQPGFRPAEW IEETGRRLXR YSSQXWESIQ LEDLKTERNE VLAVNCMLRF 600 KNLLDETVEV NCPRDAVLNL IRKMKPDIFV HSIINGSYNA PFFVTRFREA LFHYSSLYDA 660 FDINIPRDNE ERLRFESEFY GREAMNVIAC EGVERVERPE TYKQWQXRCM RAGLQPLQLD 720 QDLVKXLKDK RRNLVEHSCL XFFENCDRKD VQQTKQRSFV VXPSRRRTLT XECCVAHKFS 780 SSVLHFGNEK LRKDASARLR YYLVACMDIV CQFVCESHRS VRRLXMASDN RVEPTSQGPX 840 CGDPGVFVTC EKCHMPCVAR LSGPKNFF

Sequence ? help Back to Top

Protein Sequence Length: 868 aa Download sequence Send to blast

MDHPTFNGSP DYLNGFSIDD LAFSPDSTQF SNLTNEYQFX QFSPDLNFMD NHFSLPPDFE  60
QGSLSLPTTV SVGGADSSSD DSDFSEAXFK YVNQILLEEN IEKKPCMFYD PLGLRVTEKS  120
FYDVLGQQYP FSPNQQPLHI NPNVESPGGN NSGSCSDCSG SNSSSSPGTS NSIDPQWVGD  180
SGEQKPSFPQ XSLPNDSPFQ FNSHSSSQLS VPLENRMTSX GDGRHVDDML QGSSVEEFVA  240
QNIFTDSDSI LQFQRGLEEA SKFLPKSTQL LVDLESNTVS PEVKASVPMV VTVKKEKXEX  300
KNSXNGSKGR KNREREDVDL EEGRSSKQSA VYIEKTEESE LSEMFDKVLL STGGNNESQC  360
GNVAFKNEAS KTLQPSGQPQ GSNGNGGKAR GKKQGKKKET VDLXNLLILC AQAVSTNDFR  420
TTSELLKQVR QHASPNGDGS QRLAHFFANG LEARMGGTDT GTQKFYTSLX KRSSAVDXLK  480
SYXVHLSACP FKRMCXLFKN KMILKMAEKA TTLHIVDFGI LYGFQWPXLI QHLSKRXGGP  540
PKLRITGIEV PQPGFRPAEW IEETGRRLXR YSSQXWESIQ LEDLKTERNE VLAVNCMLRF  600
KNLLDETVEV NCPRDAVLNL IRKMKPDIFV HSIINGSYNA PFFVTRFREA LFHYSSLYDA  660
FDINIPRDNE ERLRFESEFY GREAMNVIAC EGVERVERPE TYKQWQXRCM RAGLQPLQLD  720
QDLVKXLKDK RRNLVEHSCL XFFENCDRKD VQQTKQRSFV VXPSRRRTLT XECCVAHKFS  780
SSVLHFGNEK LRKDASARLR YYLVACMDIV CQFVCESHRS VRRLXMASDN RVEPTSQGPX  840
CGDPGVFVTC EKCHMPCVAR LSGPKNFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-39	407	719	8	328	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009375904.1	0.0	PREDICTED: scarecrow-like protein 33
TrEMBL	A0A498IRE0	0.0	A0A498IRE0_MALDO; Uncharacterized protein
STRING	XP_009375904.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-175	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	MDP0000227056