PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000225852
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 303aa    MW: 34963.9 Da    PI: 5.8621
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000225852genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.88.9e-2371441128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk.........kvkaeekewyfFskrdkkyatgkrknra..tksgyWk 84 
                    +p+G+rF P+d+el+  yL++k++g++ +   +++++d+y + eP+d+ +         +  +++k++y F++ ++k+++g+r  r+  t+ g+Wk
  MDP0000225852   7 VPVGYRFMPRDDELLLGYLRPKLDGQDYPK-GIVHDCDLYGLeEPSDIWRrlnrashdgQECTDDKDIYVFTTLNSKAPNGSRVCRTvgTTGGTWK 101
                    599************************999.89*******9978****64356665554222377899******************645779**** PP

            NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ke++++  ++++g +k +++ ++ +  +++ +W+m e++l
  MDP0000225852 102 GEDAGKEIYASgIKQAIGFRKRFTYRNKGS--PQNDHWIMLEFHL 144
                    **********855677*********95444..459********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-293167IPR003441NAC domain
PROSITE profilePS5100528.8877167IPR003441NAC domain
PfamPF023659.1E-158144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAGYYQVPVG YRFMPRDDEL LLGYLRPKLD GQDYPKGIVH DCDLYGLEEP SDIWRRLNRA  60
SHDGQECTDD KDIYVFTTLN SKAPNGSRVC RTVGTTGGTW KGEDAGKEIY ASGIKQAIGF  120
RKRFTYRNKG SPQNDHWIML EFHLDPSLLR NKHHQEKNIV LCILRRKDDI SKKRKLEXRD  180
NYEENXANHF QPQALNXINV GDYNNAPSYM EQIAFDHLQP QALTATTTGD YINDPRYTEE  240
NAANHFQPQE HYAATTGDYS NAHWYTEQNA ADHFEPHDEA HNATNEDLTT ALRRMEEILM  300
SGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-15717317171NO APICAL MERISTEM PROTEIN
1ut4_B3e-15717317171NO APICAL MERISTEM PROTEIN
1ut7_A3e-15717317171NO APICAL MERISTEM PROTEIN
1ut7_B3e-15717317171NO APICAL MERISTEM PROTEIN
3swm_A3e-15717320174NAC domain-containing protein 19
3swm_B3e-15717320174NAC domain-containing protein 19
3swm_C3e-15717320174NAC domain-containing protein 19
3swm_D3e-15717320174NAC domain-containing protein 19
3swp_A3e-15717320174NAC domain-containing protein 19
3swp_B3e-15717320174NAC domain-containing protein 19
3swp_C3e-15717320174NAC domain-containing protein 19
3swp_D3e-15717320174NAC domain-containing protein 19
4dul_A3e-15717317171NAC domain-containing protein 19
4dul_B3e-15717317171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008368783.20.0NAC domain-containing protein 41-like
RefseqXP_028956511.10.0NAC domain-containing protein 41-like
TrEMBLA0A498KBK10.0A0A498KBK1_MALDO; Uncharacterized protein
STRINGXP_008368783.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.19e-17Arabidopsis NAC domain containing protein 26