PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000225680
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 776aa    MW: 86293.8 Da    PI: 5.6246
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000225680genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.8e-14547593455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  MDP0000225680 547 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 593
                    7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-4811261IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625543592IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-18545607IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-15547597No hitNo description
PfamPF000101.3E-11547592IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-18547609IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-18549598IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MAAPPPSSSR LRGMLQASVQ YVQWTYSLFW QICPQQGILV WSDGYYNGAI KTRKTVQPME  60
VSADEASLQR SQQLRELYDS LSAGETNQPP ARRPCASLSP EDLTESEWFY LMCVSFSFPP  120
GVGYCRSVLT TTANKIFDYL KWAHFLTRGH TVNVRNCISS KDEILFSYTS KAVGKCERVH  180
LGTCGSLERK LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKSARIQTVV CIPLLDGVVE  240
FGTTERVPED HAFVEHVKTF FVDHHHPPPP KPALSEHSTS NPAASSDHPH FHSPHLLQAM  300
CTNPPLNAAQ EDEEDEEEDD NQEEDDGGAE SDSEAETGRN GGAVVPAANP PQVLAAVAEP  360
SELMQLEMSE DIRLGSPDDA SNNLDSDFHL LAVSQSRNPA DQQRQADSYR AESTRRRPSV  420
QEPLSSGLQP PHTGPLALEE LTHDDDTHYS ETVSTILQGQ VTQLMDSSST DYTACLTQSA  480
FAKWSSRVDH HFLMPVEGTS QWLLKYILFS VPFLHSKYRD ENSPKFQEGE GSTRLRKGTP  540
QDELSANHVL AERRRREKLN ERFIILRSLV PFVTKMDKAS ILGDTIEYVK QLRNKIQDLE  600
ARNMLVEEDQ RSRSSGEMQR SNSCKELRSG LTLVERTQGG PPGSDKRKLR IVEGSGGVAI  660
GKAKVMEDSP PSPPPPPPQP EPLPTPMVTG TSLEVSIIES DGLLELQCPY REGLLLDVMR  720
TLRELRIETT VVQSSLNNGF FVAELRAKVK DNVSGKKVSI TEVKRVINQI IPQSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14547607868Transcription factor MYC2
5gnj_B3e-14547607868Transcription factor MYC2
5gnj_E3e-14547607868Transcription factor MYC2
5gnj_F3e-14547607868Transcription factor MYC2
5gnj_G3e-14547607868Transcription factor MYC2
5gnj_I3e-14547607868Transcription factor MYC2
5gnj_M3e-14547607868Transcription factor MYC2
5gnj_N3e-14547607868Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1551556ERRRRE
2552557RRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.140730.0bud| fruit| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0201060.0KJ020106.1 Malus hybrid cultivar bHLH3 protein (bHLH3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021805735.10.0basic helix-loop-helix protein A-like
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0N9QZR90.0A0A0N9QZR9_PRUAV; BHLH transcription factor
STRINGXP_008386510.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-50bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]