PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000225376
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 363aa    MW: 39841 Da    PI: 6.6071
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000225376genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95e-1864113255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  MDP0000225376  64 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFATAEDAARAYDRAAIILYG 113
                    59****999.**********954...5**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.7E-1264109IPR001471AP2/ERF domain
CDDcd000182.22E-2064123No hitNo description
Gene3DG3DSA:3.30.730.102.5E-2964121IPR001471AP2/ERF domain
PROSITE profilePS5103222.27364121IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2064121IPR016177DNA-binding domain
SMARTSM003801.4E-3764127IPR001471AP2/ERF domain
PRINTSPR003672.9E-106576IPR001471AP2/ERF domain
PRINTSPR003672.9E-1087103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEEDQHRDSA AEAAPDHHLP QDNSNSNKTT EDNSTTASTA TTEITNNNNR KCKGKGGPDN  60
NKFRYRGVRQ RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAII LYGSRAQLNL  120
QPSGSSSQNS TRGSSSSASS STSTSSTQTL RPLLPRPSGF GLTLPYPSSA HPVPLMASGF  180
VPYGVDLGLG VYHNVAAAAA VAGCALTSSV RMNQHPHHML DQDHEYQNNI NPLHQQQQQH  240
QQQQIVVQQF HHQYPIALSX GSGCDTSTSY LHPNPXHDQY QRQVPHQNNN NQECCSYXDV  300
NSLVGSGLST QPMEVAPGCS DIPVEAVGPM SPLMWPLTSE EECVPGLWDY GDPFFLDFKG  360
LDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1865120359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8601150.0JQ860115.1 Pyrus pyrifolia ABI4 protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008362743.20.0ethylene-responsive transcription factor ABI4-like
TrEMBLA0A498KMP80.0A0A498KMP8_MALDO; Uncharacterized protein
STRINGXP_008362743.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88472940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.13e-22ERF family protein