PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000224810
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 479aa    MW: 54042 Da    PI: 7.0729
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000224810genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.61.5e-401883542135
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssa..seceaesss 79 
                    + k+drhski T++g+RdRR+Rls+e+a++fF Lqd L fdk+skt+eWLl q++p+ik+l ++                + s+a  ++ce  s +
  MDP0000224810 188 TSKRDRHSKINTARGPRDRRMRLSLEVARKFFGLQDVLEFDKASKTVEWLLIQSEPEIKKLSRDhhrkfnyknmvrcaktT-SPAtsESCEMLSGV 282
                    679*******************************************************************99999999852.33333344333333 PP

            TCP  80 ssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                     +a   +++                 k ++++ k  ++q+++ +++ lak sr+karararertrekm+ ++k
  MDP0000224810 283 DEAP-TNINisnggnddndkvrssgiKPSAKERKIVHRQSRKGAFHPLAKASREKARARARERTREKMQRSKK 354
                    3333.1111334455566677788865555555777777777779***********************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.0E-42188351IPR005333Transcription factor, TCP
PROSITE profilePS5136931.941190248IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.839331348IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MFPSDNTSNV NELIPVSYPH VDQPFFHSRP FDHDITTVTP NFFTNSNPNP NSGQQQEGGE  60
ENLHQQHHHP PLSLLYFPSP FEDDDVLLFQ QHHHQEPDHI GISLHESQVP PYFMKEAAAA  120
ATATAAAXAA AAXAAATAAD DNTGTVVGVD HQKTTTTSVN IKMVDWDSNK NGHHVYMDDQ  180
PQIPRRRTSK RDRHSKINTA RGPRDRRMRL SLEVARKFFG LQDVLEFDKA SKTVEWLLIQ  240
SEPEIKKLSR DHHRKFNYKN MVRCAKTTSP ATSESCEMLS GVDEAPTNIN ISNGGNDDND  300
KVRSSGIKPS AKERKIVHRQ SRKGAFHPLA KASREKARAR ARERTREKMQ RSKKPSNDQA  360
KLSRLNSWNP FESGEESSAY NNNMNNTTND QPDSMVALRP YPDGVEEPLS SSLAGDIQDM  420
VVDHGTTHDA MXVMGKWSPS SVFTPLQQNT GISQEHQQFA DFQFFDKPWD VYNNTHKLF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5010650.0KM501065.1 Malus domestica TCP domain-containing protein 18 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393282.30.0transcription factor TCP18-like
RefseqXP_017192948.20.0transcription factor TCP18-like
RefseqXP_028949032.10.0transcription factor TCP18-like
TrEMBLA0A498I1830.0A0A498I183_MALDO; Uncharacterized protein
STRINGXP_009337431.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.14e-24TCP family protein