PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000224779
Common NameMdTM6
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 28069.7 Da    PI: 9.4896
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000224779genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.24.4e-28959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i++s+t k++ey+s
  MDP0000224779  9 KLIENQTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTSKMHEYIS 59
                   569**********************************************86 PP
2K-box84.71.9e-2871163193
          K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                    yqk+ g +l+ +++es++  l kLk+ +++L+re+R++lG dL+ Ls+ +L++Le+++++sl  iR++K++++++q+e+++kk k+l+e+  +
  MDP0000224779  71 YQKTMGIDLWRTHYESMKDTLWKLKEINNKLRREIRQRLGHDLNGLSYDDLRSLEDKMQSSLDAIRERKYHVIKTQTETTKKKVKNLEERRGN 163
                    78999999********************************************************************************98755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.174161IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-38160IPR002100Transcription factor, MADS-box
CDDcd002654.77E-37280No hitNo description
SuperFamilySSF554553.53E-36295IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-221157IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-263859IPR002100Transcription factor, MADS-box
PfamPF014867.3E-2082164IPR002487Transcription factor, K-box
PROSITE profilePS5129714.99684177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGKIEIKL IENQTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMLSN TSKMHEYISP  60
STTTKSMYDD YQKTMGIDLW RTHYESMKDT LWKLKEINNK LRREIRQRLG HDLNGLSYDD  120
LRSLEDKMQS SLDAIRERKY HVIKTQTETT KKKVKNLEER RGNMLHGYFD QEAASENPQY  180
CYVDNEGDYE SALVLANGAN NLYTFQLHRN SDQLHHPNLH HHRGSSLGSS ITHLHDLRLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-14159159MEF2C
5f28_B4e-14159159MEF2C
5f28_C4e-14159159MEF2C
5f28_D4e-14159159MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens, petals and carpels (PubMed:17920788). Expressed in fruits and seeds (PubMed:17920788). {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0810930.0AB081093.1 Malus x domestica MdTM6 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008364380.11e-180floral homeotic protein DEFICIENS-like isoform X1
SwissprotQ003J21e-110TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A498HTZ21e-178A0A498HTZ2_MALDO; Uncharacterized protein
STRINGXP_008346632.11e-179(Malus domestica)
STRINGXP_008364380.11e-179(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.17e-66MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]