PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000224466
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WOX
Protein Properties Length: 368aa    MW: 42213.2 Da    PI: 5.7548
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000224466genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox651.1e-20213273257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    r+R+t+++ ql++Le+ Fe+ n +p +++++eL+++l    +++e++V++WFqNrRa+ k+
  MDP0000224466 213 RQRWTPSPVQLQILEQIFEEgNGTPCKQKIKELTMELtqhgQISETNVYNWFQNRRARSKR 273
                    89*****************99**************************************97 PP
2Wus_type_Homeobox96.13e-31212275265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtP+p Q++iLe+++++G  tP k++i+++t+eL+++G+i+++NV++WFQNr+aR+++kq
      MDP0000224466 212 SRQRWTPSPVQLQILEQIFEEGNGTPCKQKIKELTMELTQHGQISETNVYNWFQNRRARSKRKQ 275
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-18207279IPR009057Homeodomain-like
PROSITE profilePS5007114.787209274IPR001356Homeobox domain
SuperFamilySSF466893.55E-18211277IPR009057Homeodomain-like
SMARTSM003892.2E-13211278IPR001356Homeobox domain
CDDcd000864.00E-13213275No hitNo description
PfamPF000461.8E-18213273IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGEWRQQQQQ IINQNLQNPE EDDGVGNGNG GLFVKVMTDE QMEQLRQQIA VYTTICDQLV  60
DLHKQLSAQQ DLTGRSAPLS LFQSELGFCN EFIHLQIIDS WGGSMNTRSS SWRSLPQAWW  120
IYPPPTLSGV QVEGPXQIQH PAWPSLNLRN KRRISXNTKM WISKLKFFCG RKYFIWCGLP  180
FPIIISLSVS GMRLGNFYCD PFMASGGHKI TSRQRWTPSP VQLQILEQIF EEGNGTPCKQ  240
KIKELTMELT QHGQISETNV YNWFQNRRAR SKRKQSMTAQ NNAESEAEPE VESPRDEKTK  300
PEDILSFDNS ALRAENMYLQ SPELGVIFVE DSMYLWLQSD YSEDVISVCS SKVKSGVNDL  360
QKQFMTES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266274RRARSKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.234610.0cell culture| fruit| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008356422.19e-94WUSCHEL-related homeobox 8-like
TrEMBLA0A498JSL32e-94A0A498JSL3_MALDO; Uncharacterized protein
STRINGXP_008346451.13e-93(Malus domestica)
STRINGXP_008356422.13e-93(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.14e-42WUSCHEL related homeobox 13