PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000224390
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Dof
Protein Properties Length: 322aa    MW: 33731.7 Da    PI: 7.1116
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000224390genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1222e-383191262
         zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                   ++++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s
  MDP0000224390 31 EQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGTRKNTKRS 91
                   57889****************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-282886IPR003851Zinc finger, Dof-type
PfamPF027015.9E-333389IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.2733589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
PfamPF003322.0E-6238290IPR000490Glycoside hydrolase family 17
Gene3DG3DSA:3.20.20.806.7E-7239291IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514453.65E-5241320IPR017853Glycoside hydrolase superfamily
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0042545Biological Processcell wall modification
GO:0045787Biological Processpositive regulation of cell cycle
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MPSDSGDQQQ KSSQNRRTVK DAQATGAPPP EQEHLPCPRC DSTNTKFCYY NNYNFSQPRH  60
FCKSCRRYWT HGGTLRDIPV GGGTRKNTKR SRTATSATTT TATSDNNAIS ATPVFLNPGG  120
GAALQFGDWK GNMGNGCGGD GSFNSLLNTH GPGGFLALGG FGLGLSGGFE EMGFGLGRAF  180
WPFPAMGGDC GSGGPHGGMM NTWEIENGEG GGIVNVGVSP VGAELCSWPE LAISSPGNGL  240
NIVPAMQNFR NALITANLSI PLSPAVFQNV LTSPYPPSAG TWHPDAASIM VIVQDGVLGC  300
TKLLDASLDA LYWALEKVGH KS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.304730.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in the whole plant. {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:8718629}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00402DAPTransfer from AT3G50410Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). {ECO:0000269|PubMed:10758484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6629221e-67KP662922.1 Cajanus cajan Dof38 (Dof38) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315680.11e-176dof zinc finger protein DOF3.4-like
SwissprotQ390884e-50DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBLA0A498KFW20.0A0A498KFW2_MALDO; Uncharacterized protein
STRINGXP_008344280.11e-175(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28013168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.13e-35OBF binding protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]