PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000224218
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 630aa    MW: 71318.9 Da    PI: 6.9105
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000224218genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.61.5e-162778556
                   SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   +++t eq+++Lee+F+++ +p+ ++re+L ++lgL+ +q+++WFqN+R++ k
  MDP0000224218 27 QRHTFEQIQRLEEFFRNCTHPDDDQREQLXRELGLDANQITFWFQNKRTQNK 78
                   567889******************************************9987 PP
2START39.41.6e-132173372104
                    HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                    +a +a++el+k+ + ++p+W+ks+      +n+d + + f++++       ++e +++sgvv   +a lv  +ld + +W   ++    ka t+ev
  MDP0000224218 217 IAASAMEELIKLFQIDKPVWMKSPtdgrYLLNRDNYDKMFPKANHfrnscARVESSKDSGVVHISAAYLVDMFLDFN-KWEDXFPtiitKARTIEV 311
                    67899*******************988866777777777777666799999**************************.****************** PP

                    ECTT......EEEEEEEEXXTTXX-S CS
          START  85 issg......galqlmvaelqalspl 104
                    ++sg      g lqlm+ e+  lspl
  MDP0000224218 312 LESGmignrsGCLQLMYEEMHILSPL 337
                    **********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-16982IPR009057Homeodomain-like
SuperFamilySSF466892.59E-15979IPR009057Homeodomain-like
PROSITE profilePS5007115.5162080IPR001356Homeobox domain
SMARTSM003895.9E-112284IPR001356Homeobox domain
PfamPF000463.3E-142778IPR001356Homeobox domain
CDDcd000861.18E-132881No hitNo description
SuperFamilySSF559615.31E-8207339No hitNo description
PROSITE profilePS5084818.257207339IPR002913START domain
PfamPF018522.7E-8217337IPR002913START domain
SuperFamilySSF559611.57E-9397596No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MXLPRNHPTS GDGHEASSSR RENKKFQRHT FEQIQRLEEF FRNCTHPDDD QREQLXRELG  60
LDANQITFWF QNKRTQNKIQ NERAENIALH QLNESIRREN CLMRETLKXV VCPTCGGASI  120
PEEERQLNXQ RLRQENXYLK QEHDKVAXLL SKYKGKPLSH IKSLAXVVGS SQNLSPGCSL  180
NHVIVRSPPL RLNLTNTAIA YQLNENVQME KALMKDIAAS AMEELIKLFQ IDKPVWMKSP  240
TDGRYLLNRD NYDKMFPKAN HFRNSCARVE SSKDSGVVHI SAAYLVDMFL DFNKWEDXFP  300
TIITKARTIE VLESGMIGNR SGCLQLMYEE MHILSPLITW IEHMAVDDKT QTHWLYRDLI  360
CRSVAYGAER WIVTLQKMCE RFHCXMNGCV FGGVVTLPEG KXSLMKLSQR MVKNFCGMLS  420
MAGNLDXPQL SEVDNTGIQV SVHTSTEIGQ PHGTIXSVAT SXWLPLSTQM IFNFFKDEKT  480
RVQWDVLSNG NPVHXIAYIS TGTHPENRIS IIRPFTPTED NMLILQECYI DPLGSFXIYA  540
PVDMQILNVA VSGEDSSNMS ILPSGFMISS DGRPEMGGAC GSLLTVAFHI LVSSPTTSKQ  600
MNTELVATVN TLISSNVEKI KVALNCSGLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0276171e-123AB027617.1 Pyrus pyrifolia gene for UDP-glucose pyrophosphorylase, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008365756.30.0homeobox-leucine zipper protein HDG11-like
TrEMBLA0A498JA400.0A0A498JA40_MALDO; Uncharacterized protein
STRINGXP_009367128.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-175homeodomain GLABROUS 11