PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000223738
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 707aa    MW: 77287.3 Da    PI: 4.6433
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000223738genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP99.33.3e-31245310166
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTT CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrL 66 
                    +C+++gC++dls+ak y+rrh+vCe hskap v+vsgl++rfC +Csrfh+lsefD++k+sCrr+L
  MDP0000223738 245 ICKADGCAVDLSDAKVYNRRHRVCELHSKAPLVIVSGLKRRFCHKCSRFHDLSEFDDTKQSCRRHL 310
                    5***************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.3002.2E-4210237IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:4.10.1100.107.8E-29240307IPR004333Transcription factor, SBP-box
PROSITE profilePS5114125.068243320IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-29244312IPR004333Transcription factor, SBP-box
PfamPF031102.1E-24246310IPR004333Transcription factor, SBP-box
SuperFamilySSF525408.67E-22392567IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000098.94E-6400550No hitNo description
Gene3DG3DSA:3.40.50.3001.9E-4401425IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009314.3E-11410541IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3002.2E-4426434IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.2E-4435524IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MKIEESGIIQ YDPLVELPSG DGGESSGSGA ETTPHEQNGE NGGQQMAPXG GGVGAAALGA  60
ALARDVRESL VSVSNIEAVI NQIEXSGVVK LQNEQNEAKG SCEVPAAMAK SAVGLNALSV  120
EGTRDLTETL DPEANIKVGW QNVEESWVAQ GKTEHPSCTV GLDAMNMQVG ARSMEETSVS  180
DVEAGLKQIQ GKEVSEPDAP FRELKEDVLK DEEXEELDEQ VEDHHDRKKK GAESVTGASG  240
DGMAICKADG CAVDLSDAKV YNRRHRVCEL HSKAPLVIVS GLKRRFCHKC SRFHDLSEFD  300
DTKQSCRRHL PYIGTQVKDX SGIDTVIGRI EWSVVEATPP AVGLNVXSVK GXRDXKETXQ  360
TSASNTEAGL XQIXXKDVLX FXPPYAEYKE TEYIASSVTV GLDVLLRGLK RSLLNDEVSA  420
VVLTGPQGSG KTTLAKYFCA DEEVKNIFKX NIFFVLVSKN PSLSLMVQTL YQQIEPKGFQ  480
IPALQDESIA LHWLRQFFME TALHPSVLVL DDVWPGSESL LDKFDEFKTP NYKIMVTSRS  540
EFPAFGFPYY LKSLNDEDEM TLSRQSHTDI ESLDEFLSWV SLPSSVTFDD ESPIDHFPDS  600
SASDLGGRSS DVSTASRPMD QFQDSSASTL GDKSSCIPKD AGAKYGSGAY PTLTWSLSFN  660
FPLDNPVKST QKYMRQKVLI KVSLKEYEKK KAMKVVSAVK GTLIFLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-26237310175squamosa promoter binding protein-like 4
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959573.10.0uncharacterized protein LOC103413440 isoform X1
TrEMBLA0A498JL740.0A0A498JL74_MALDO; Uncharacterized protein
STRINGXP_008338363.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1508325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.21e-26squamosa promoter binding protein-like 4