PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000223651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | NF-YA | ||||||||
Protein Properties | Length: 200aa MW: 22103.8 Da PI: 10.2978 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.5 | 3.9e-32 | 45 | 101 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl k+rkpylheSRh hA++R Rg+gGrF MDP0000223651 45 DGPIYVNAKQYHGILRRRQSRAKLEAHNKL-LKARKPYLHESRHLHAVNRVRGTGGRF 101 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.9E-35 | 43 | 104 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.112 | 44 | 104 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.0E-27 | 47 | 101 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.4E-24 | 47 | 69 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 49 | 69 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.4E-24 | 78 | 101 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MGCVPYPYVD PYFSGFLTAY GPQAMSHMLG MAPTRVPLPP DLAQDGPIYV NAKQYHGILR 60 RRQSRAKLEA HNKLLKARKP YLHESRHLHA VNRVRGTGGR FLSTKRQSDQ NPSSNTHHVS 120 DSISSHQKDT GGTESNHSGS SDFLPSVALH PDMTSVSNTN DNFQQPDRRF SAIPPHMSGA 180 MQFPGGFMRA GNQHCASVVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-21 | 45 | 114 | 2 | 74 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.1422 | 1e-139 | root |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028944675.1 | 1e-143 | nuclear transcription factor Y subunit A-7-like | ||||
TrEMBL | A0A498KFE5 | 1e-144 | A0A498KFE5_MALDO; Uncharacterized protein | ||||
STRING | XP_008344031.1 | 1e-144 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6949 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 8e-42 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000223651 |