PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000223109 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 20010 Da PI: 6.2428 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.7 | 8.3e-38 | 15 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaC++lrr+C +C lapyfp e+ kfa vh++FGasnv+k+++ ++e++reda++++vyeA ar+rdPvyG+++ i++lq+ +e+l+++l++ MDP0000223109 15 PCAACRMLRRRCDINCSLAPYFPIEEIDKFAGVHRVFGASNVIKMIQMVEETRREDAVKAIVYEATARIRDPVYGSTAAIFHLQKMIEELRSQLET 110 7**********************************************************************************************9 PP DUF260 97 lkee 100 +k++ MDP0000223109 111 IKSQ 114 9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.519 | 14 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-37 | 15 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MDGQITPMRT RVHQPCAACR MLRRRCDINC SLAPYFPIEE IDKFAGVHRV FGASNVIKMI 60 QMVEETRRED AVKAIVYEAT ARIRDPVYGS TAAIFHLQKM IEELRSQLET IKSQVLELQQ 120 HRDQLLGILM NNVHSLDLFS DMHDPMFGES SKVQEDPVWD LEPRDERQRE RV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-34 | 6 | 116 | 2 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-34 | 6 | 116 | 2 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017188837.1 | 1e-126 | LOB domain-containing protein 1-like | ||||
TrEMBL | A0A498JAZ8 | 1e-123 | A0A498JAZ8_MALDO; Uncharacterized protein | ||||
STRING | XP_008233120.1 | 1e-89 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14068 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 8e-44 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000223109 |