PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000222975
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 684aa    MW: 76218.7 Da    PI: 6.1321
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000222975genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.5e-071361652756
                    HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  27 aeereeLAkklgLterqVkvWFqNrRakek 56 
                    ++er++L ++ gL+ +q+ +WFqN+R++ k
  MDP0000222975 136 ENERKQLCREXGLEPNQIMFWFQNKRTQIK 165
                    689***********************9877 PP
2START129.44.2e-412815032206
                    HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                    +a +a++el k+ + e+p W ks+      +n d + + f+++k       ++e +++sgvv   +a lv  +ld++ +W e ++     a+t+ev
  MDP0000222975 281 IAASAMEELXKLFQIEKPIWIKSPtngrXLLNXDNYDKMFPKAKHfknsxARVESSKDSGVVHISAAHLVDMFLDSN-KWEELFPtivtTAKTIEV 375
                    67899*******************999966666666666666666777999**************************.******99999******* PP

                    ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
          START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdl 172
                    +++g      g lqlm+ +   lsplv  Rdf+f+R+++  + g+wvi+dvS +s +     ++++ R   lpSg++ie++ ng+ k+tw+eh+++
  MDP0000222975 376 LETGmsxnrnGCLQLMYEQIHILSPLVLpRDFYFLRHCQXTEPGTWVIADVSYNSAKGSFArQPQSWR---LPSGCMIEDMHNGYAKITWIEHMEV 468
                    **************************966**************************9998778999999...************************* PP

                    -SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 173 kgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                    ++++  h l+r l+ s+ a ga +wv tlqr ce+
  MDP0000222975 469 DDKTQtHRLYRDLICSSXAYGAERWVVTLQRMCER 503
                    **9998***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-8111168IPR009057Homeodomain-like
CDDcd000862.35E-5119167No hitNo description
SuperFamilySSF466896.68E-8130171IPR009057Homeodomain-like
PROSITE profilePS5007110.592131167IPR001356Homeobox domain
PfamPF000464.8E-5136165IPR001356Homeobox domain
PROSITE profilePS5084842.491271506IPR002913START domain
SuperFamilySSF559613.3E-29272504No hitNo description
CDDcd088757.30E-105275502No hitNo description
SMARTSM002341.2E-24280503IPR002913START domain
PfamPF018524.2E-34281503IPR002913START domain
Gene3DG3DSA:3.30.530.202.2E-7337467IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MGMIVVPLMG CDGWGVGEIM VIGVVAATVV VVVVLAVVVL VILTVVVVAL VTIVVVVTVA  60
TMVVIMVVAV XVSEECELVS KTFSSSAILT GKLGKEWSSR EIINLPVMDM KHRLPARGTR  120
SVNAILLSRY NDWKNENERK QLCREXGLEP NQIMFWFQNK RTQIKAQTET AETTALRQLN  180
ENIRXENFVM KEALKNVVCP TCLQRLQLEN SYLKQEHDKL ANLLPKYSET PVVGSSLNLS  240
PGCSMNQVIA RPPLNLSPTN PALAYQLNEN AEMEKALMKD IAASAMEELX KLFQIEKPIW  300
IKSPTNGRXL LNXDNYDKMF PKAKHFKNSX ARVESSKDSG VVHISAAHLV DMFLDSNKWE  360
ELFPTIVTTA KTIEVLETGM SXNRNGCLQL MYEQIHILSP LVLPRDFYFL RHCQXTEPGT  420
WVIADVSYNS AKGSFARQPQ SWRLPSGCMI EDMHNGYAKI TWIEHMEVDD KTQTHRLYRD  480
LICSSXAYGA ERWVVTLQRM CERFDCLMDD VGSTCVFGGV VTLPEGKKSL MKLSQRMWDV  540
LSHGNPVXEI AYISTGTHPE NHISIIRPFI PXEDNMLXLQ ECHIDPLGSF IIYAPVDIQT  600
LNVAVSGEDS SNIAILPSGF LISGDGRPEM GDACXSLVTV XFHILVSSPT TSEQMNMELV  660
ATVNTLISST VTKIKVALKC SGLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0276171e-166AB027617.1 Pyrus pyrifolia gene for UDP-glucose pyrophosphorylase, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367128.20.0PREDICTED: homeobox-leucine zipper protein HDG11-like
TrEMBLA0A498HGL50.0A0A498HGL5_MALDO; Uncharacterized protein
STRINGXP_008343264.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.11e-135homeodomain GLABROUS 8