PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000221590
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 354aa    MW: 39632.7 Da    PI: 8.3196
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000221590genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.13.7e-211562249
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                   +i n+   qvtfskRrng++KKA+EL++LC+ae+a+++fs+  k++ +
  MDP0000221590 15 KITNEASLQVTFSKRRNGLFKKASELCTLCGAEIALMVFSPGKKVFSF 62
                   58899999*********************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.89666IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-30665IPR002100Transcription factor, MADS-box
CDDcd002656.89E-33775No hitNo description
SuperFamilySSF554551.99E-25792IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-17828IPR002100Transcription factor, MADS-box
PfamPF003192.8E-241562IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-172843IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-174364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MARTSXGRQR VPMTKITNEA SLQVTFSKRR NGLFKKASEL CTLCGAEIAL MVFSPGKKVF  60
SFGHPCFETL IDRFEGRLSL AQLTMGHDMQ QMLEAYRNVS LNVLSQDLTK VMVLVDNEKK  120
LGVNLSQTMK ESMSENWWER PLEEIEIDRL EFLKTYMEEL GCKVNETRGK MLLPQVFETA  180
NNNNNFFIGS SSLNTAAGPY DQMMQTHANQ PSSSTGGGLN ENTSTWPFSA WNPCLATSFH  240
HRLQTYLPKV SDEGIVRCYK YFSPGASTSM KLLRHQQPVM AGGDAFSDAK PTPTRSTWCS  300
SSSTDPRWRP SSPPSAPESW SSCSRTLFLR CDESKAKTDT SAMEAQNGKD SQVK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.31281e-48bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008360611.21e-175agamous-like MADS-box protein AGL62
TrEMBLA0A498JVU71e-173A0A498JVU7_MALDO; Uncharacterized protein
STRINGXP_008360611.11e-174(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2286644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-46AGAMOUS-like 62