PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000221436
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 398aa    MW: 44666.1 Da    PI: 8.1119
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000221436genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.75.2e-28143192251
        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                    pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ
  MDP0000221436 143 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 192
                    9************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.4E-13140192IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-24141192IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-20143192IPR006447Myb domain, plants
PfamPF002491.0E-5144192IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MMKKISLPLP DLSLQISPPS SADDLPYDIG VTRKALYSTD RSSATDSGSS GSDLSQEHGF  60
YHLERSGSYN LASAVEEPKL SLGFDERKDH HHHMASPPPP ALQMPRNFNS NHCFNHHHPQ  120
IYGREFKRSA RTVGVVKRSI RAPRMRWTTT LHAHFVHAVQ LLGGHERATP KSVLELMNVK  180
DLTLAHVKSH LQWGVENKRV RTKKHLEGMY RTVKSTDNKG TGHEGQTEIG LSQNPEINPA  240
LQANGQLSCD KVNTNREIFI AEVSKHLEFD EHGVNWLGLL WEYMIPMCDQ KSRKFTANLN  300
AVEIQRGLRS SSTEITTGSS NLRHEDGLTY SHSPPSNGTK VEEDDSGRRH GYAQSMKERP  360
TLDCSSLASS DMYLNLEFTL GRPSGEWTLL NSLNLQMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-14144192452Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-14144192452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-14144192452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-14144192452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-14144192452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-14144192452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-14144192452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-14144192452Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2834734e-95KP283473.1 Prunus incisa isolate 462-2010A aberrant testa shape (ATS) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008378435.10.0probable transcription factor KAN4
TrEMBLA0A498HQW90.0A0A498HQW9_MALDO; Uncharacterized protein
STRINGXP_008378435.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.23e-45G2-like family protein