PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000221322
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARF
Protein Properties Length: 803aa    MW: 88662 Da    PI: 8.0965
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000221322genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.5e-23130231199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + ++
  MDP0000221322 130 FAKTLTQSDANNGGGFSVPRYCAETIfpkldysADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAEN 221
                    89****************************996555545..8************************************************..4488 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    + l+v+++r+
  MDP0000221322 222 GDLCVGIRRA 231
                    999****997 PP
2Auxin_resp111.77.1e-37305388183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    aa+ a+++++FevvY+Prast+eF+v ++ v++a++ +++ GmRfkmafetedss++++ +Gtv++v+ ++p+ WpnS+Wr+L+
  MDP0000221322 305 AATMAAKGQPFEVVYYPRASTPEFCVXASAVRAAMREQWCSGMRFKMAFETEDSSRISWfMGTVSSVQVANPICWPNSPWRLLQ 388
                    68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-38121233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-29123237IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-21129230No hitNo description
SMARTSM010193.4E-23130232IPR003340B3 DNA binding domain
PROSITE profilePS5086313.056130232IPR003340B3 DNA binding domain
PfamPF023626.6E-22130231IPR003340B3 DNA binding domain
PfamPF065075.3E-32305388IPR010525Auxin response factor
PROSITE profilePS5174518.843691771IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MAGTKATRVG PNPMXRTMKE SEKSLDPQLW HACAGGMVHM PPVNSKVFYF PQGHAEHAQS  60
GGGVDFSAAS LRIPSLVLCR VAAIKFMADP ETDEVFAKIR MNPIENEAFA AEDGDTEAYG  120
SENQEKPASF AKTLTQSDAN NGGGFSVPRY CAETIFPKLD YSADPPVQTV IAKDVHGEVW  180
KFRHIYRGTP RRHLLTTGWS TFVNQKKLVA GDSIVFLRAE NGDLCVGIRR AKRGLDGGGG  240
NEVASGWNNS HSSGGGSGGC VLPYGSFCVF LREEDNKMRN GGGNLSPNGN MRGKGRVRPE  300
SVVEAATMAA KGQPFEVVYY PRASTPEFCV XASAVRAAMR EQWCSGMRFK MAFETEDSSR  360
ISWFMGTVSS VQVANPICWP NSPWRLLQTW HCRPYGLKLA LWELRTHLVV HILLGHSMNY  420
LRSVVYLNSV TLLKSCHLII WLDIDXQTTI LQVTWDEPDL LQNVXCVSPW LIELVSNFPM  480
IHMSPFSPPR KKLRLPQHPD FSLDGQLTLP SFSGNPLGPS SPLCCLPNNT PSGIQGARHA  540
QFRISLSDLH LNNKLQSGLF SSSFQRFDQS SRISNGIRAG HTSSNENLSC LLTMGNSSQN  600
SEKPDNVKKH KFLLFGQPIL TEQQISRSCS SEAVSQLLPG KNSKDGSQDK TXFFFNGSES  660
VLGRQVXLEK STSAGFSWNK DFQATDLDLE TGHCKVFMES EDVGRTLDLS ALCSYEELYR  720
RLANMFEIEK PEMMSHVLYR DVTGAVKQTG VEPFSDFMKT AKRLTILTHP ASESIGRTWI  780
RGMQNAENGL GATXKTGPLS IFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A4e-652840422352Auxin response factor 1
4ldw_A4e-652840422352Auxin response factor 1
4ldw_B4e-652840422352Auxin response factor 1
4ldx_A4e-652840422352Auxin response factor 1
4ldx_B4e-652840422352Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.158780.0bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367062.10.0PREDICTED: auxin response factor 18 isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A498KAT70.0A0A498KAT7_MALDO; Auxin response factor
STRINGXP_009367062.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]