PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000220708 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 176aa MW: 19277.8 Da PI: 8.1425 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.4 | 3.3e-40 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk l+r+C++ C++apyf +++pkkfa vhk+FGasnv+k+l+++pe++r d+++sl+yeAear+rdPvyG++g i+ l++++ ql+++la MDP0000220708 12 SCAACKSLKRRCTPTCIFAPYFRSDEPKKFAQVHKVFGASNVSKILTEVPEDQRADTVNSLAYEAEARLRDPVYGCIGAISMLERKMIQLQHDLAI 107 6*********************************************************************************************99 PP DUF260 97 lkee 100 ++++ MDP0000220708 108 ARAR 111 9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.086 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.0E-40 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence Send to blast |
MKGSHEPRSS SSCAACKSLK RRCTPTCIFA PYFRSDEPKK FAQVHKVFGA SNVSKILTEV 60 PEDQRADTVN SLAYEAEARL RDPVYGCIGA ISMLERKMIQ LQHDLAIARA RLVCYAPKNS 120 PSSSSSCSCC PMLDEGTFSG FPAWSGLNGN NFSQNASELI SQHGQTSDFS YSSYIL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-45 | 7 | 116 | 6 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-45 | 7 | 116 | 6 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008374922.1 | 1e-130 | LOB domain-containing protein 21-like | ||||
Swissprot | Q9SRL8 | 2e-61 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A498KKS3 | 1e-128 | A0A498KKS3_MALDO; Uncharacterized protein | ||||
STRING | XP_008374922.1 | 1e-129 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5944 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G11090.1 | 4e-52 | LOB domain-containing protein 21 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000220708 |
Publications ? help Back to Top | |||
---|---|---|---|
|