PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000219838
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 538aa    MW: 60965.4 Da    PI: 9.6737
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000219838genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP138.26.7e-432664272135
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssa..seceaessss 80 
                    + k+drhski T++g+RdRR+Rls+e+a +fF Lqd LGfdk+skt+eWLl q++paik+l ++               s+s+a  ++ce  s + 
  MDP0000219838 266 TSKRDRHSKINTARGPRDRRMRLSLEVALKFFGLQDALGFDKPSKTVEWLLIQSEPAIKKLSRDhhrqfnykhmvrcakSTSPAtsESCEVLSGVD 361
                    679****************************************************************99999999988744444333443333333 PP

            TCP  81 sasnsssg...............kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                    +a     +               k ++++ k  ++q+++++++ lak sr+karararertrekm+ ++k
  MDP0000219838 362 EAP----TnvnisingkvrsrgiKPSAKERKFVHRQSRKSAFHPLAKASREKARARARERTREKMQRSKK 427
                    333....02224466888888875555555777788888889***********************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.6E-44266424IPR005333Transcription factor, TCP
PROSITE profilePS5136932.723268326IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.839404421IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MVFLLCCLSQ PLYLLSMTID GNLRHCRQQL SFSSAQLAVN TVTHGCLSQS CPIISLTTSA  60
GKVKNKCTEI SFNGNGFIIK SFSKPTKQAK SLRGRYNMFP SHNNNLNELV PVSYPHVDQS  120
IFHSWPSYHD NSTLTPNSLT ILNPNPNSRQ QEGGEENLHQ QHHHLPFSLL YFPSPFEDDD  180
VLLFDQQHHH QEPDHIELSI HESQEPLYFM KEAAAAAAAD DNTVVGNDHQ KTTTTSVNRK  240
MVDWDSNKKG HRMNMDDQPQ IPRKRTSKRD RHSKINTARG PRDRRMRLSL EVALKFFGLQ  300
DALGFDKPSK TVEWLLIQSE PAIKKLSRDH HRQFNYKHMV RCAKSTSPAT SESCEVLSGV  360
DEAPTNVNIS INGKVRSRGI KPSAKERKFV HRQSRKSAFH PLAKASREKA RARARERTRE  420
KMQRSKKPSN DQANSSRLSS WNPFETEEES PAHNNNMNST TNDQPNSRAV LRDYPDEVQE  480
PLSSPQAGNI QDMVVDHGTT HDAMVVLGKW SPPPVFTRLQ QNTGISQEVT STTKFQLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5010650.0KM501065.1 Malus domestica TCP domain-containing protein 18 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374722.10.0transcription factor TCP18
RefseqXP_008374723.10.0transcription factor TCP18
TrEMBLA0A498JRK60.0A0A498JRK6_MALDO; Uncharacterized protein
STRINGXP_008374722.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.11e-24TCP family protein