PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000218476
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 879aa    MW: 98243.9 Da    PI: 9.3493
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000218476genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.28.9e-06182198522
                    --SGGGGTS--TTTTT-S CS
        zf-CCCH   5 lCrffartGtCkyGdrCk 22 
                    lC++f+  G C++G+ C+
  MDP0000218476 182 LCKDFMT-GRCRRGSDCQ 198
                    9******.*********8 PP
2zf-CCCH20.86.8e-07243263526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     C++fa+ G C++G++CkF H 
  MDP0000218476 243 YCSDFAK-GKCRRGASCKFDHH 263
                    6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.9E-4177203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.497177204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4181201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.065238265IPR000571Zinc finger, CCCH-type
SMARTSM003560.002239264IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4242263IPR000571Zinc finger, CCCH-type
SMARTSM003560.012302328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.126302329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-5305327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MSRSNRKRSS KWDLVEGPQF EDANMQDNGW MGKAGRAFHH KESGRDWLSP ETNDLHRPKH  60
DLDMPSREPL PGSRGSHKNE SINKGCKRYM NDSMVWDGDG NCSTRMSPGL DEWREHRSRS  120
PKSGWRRSLR GRSRSRSRSR SKSQSWSRSK SQSWSRSPDR GYRRESLFLD RNRGRPGISA  180
QLCKDFMTGR CRRGSDCQML HEGNSNYDDS WESRHRKCDA SRYSTPPDTT EYYPLKSERY  240
SAYCSDFAKG KCRRGASCKF DHHRASDGFS KGSTNENTRE RENERRNRDI STERGAEXVL  300
HRSSDIPCKF FAAGNCRNKK NCRFSHHIQA RASPERMSRD GRWGPSHSLX DAAPAWSGPK  360
WSDTGTLSDA AMLTVDNRNI XVPEVRSSAW SVDDNRWGCD KNNENKNCAD RSVSHEAVER  420
NEKDTNLWNE GSVGARVDLP KSRDTEKWLG DMSPDWNYTV QSSNHVGKQE HSRITQGSEP  480
STQVHGAASI IEPMVAERSD FLQNKDVRVD GVXSVPYDNR TAIEEPSSFR NNLNVTANIM  540
ARQSFDHSGQ SSSAFPFSGL STSGQSKKLI PCGGVVKSPQ DTLSPESKSV TKSDIGDAKT  600
SLVDGIPQVP NLVGGKELTQ LTNLSASLAQ LLGNRQQLPQ IYAALNSHNA PLLPKSERST  660
EQLLAAAIQR DPTVVSHKPY DPMCDSIEHR IINNQMCLLP NSAGNTSIDR KVENLSNVVS  720
LSSLPSGANA NNYHQTNNPV EEPTHKDHQL SQHGAKSEVV EGNGALGAEE SKSVQEENNS  780
PENGPIEVXG GKKXKEVKGS RAFRFALVEN VKELLKPSWK EGQVSKDAYK TIVKKVVDKV  840
TSTMQGANIP QTQEKIDHYL SFSKPKLTKL VQVSAXTVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129141RGRSRSRSRSRSK
2131139RSRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008365252.20.0zinc finger CCCH domain-containing protein 38-like
RefseqXP_017186030.20.0zinc finger CCCH domain-containing protein 38-like
RefseqXP_028955638.10.0zinc finger CCCH domain-containing protein 38-like
RefseqXP_028955731.10.0zinc finger CCCH domain-containing protein 38-like
TrEMBLA0A498KPD10.0A0A498KPD1_MALDO; Uncharacterized protein
STRINGXP_008365252.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-09C3H family protein