PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000217945
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 314aa    MW: 35395.4 Da    PI: 7.3133
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000217945genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.54.1e-12237261226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    ktelC+ + +tGtC+y ++C+FaHg
  MDP0000217945 237 KTELCNKWEETGTCPYQENCQFAHG 261
                    9***********************9 PP
2zf-CCCH26.21.4e-08274299126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    ykt lCr  +++G C+yG rC+F H+
  MDP0000217945 274 YKTQLCRMVLAGGACPYGHRCHFRHS 299
                    9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.71E-10232267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-17232268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.573235263IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-7235262IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9237261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-9269304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-13269302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136273301IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5273300IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-6274299IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEPNTNTALP NTPDSSRGFC SDFSSNYQPI YTLPSSLSLT PSTRSSFSDT DSDDHHHSTT  60
SHRLNQAQLV LEYEELRDHY DLCNSHLRNL TNELDSLRHE NAQLRSANTD LVKLLSSQAA  120
FQSFLLSSSS SSAYQRPTAT SFLDDFRRLG FGSLGLGPQD GVVSEESSDI SPTSVMERNR  180
FVDADRISLP KSISVRSSNR PRVLSVSRPM TIIKWVMVVC GKVQQSQMKV FNQGMLKTEL  240
CNKWEETGTC PYQENCQFAH GVXELRPVMR HPRYKTQLCR MVLAGGACPY GHRCHFRHSL  300
TEQEKLQLVV SDSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-23237302570Butyrate response factor 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.48491e-174leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028953773.10.0zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A498HHL70.0A0A498HHL7_MALDO; Uncharacterized protein
STRINGXP_009344133.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.14e-54C3H family protein