PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000217837 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 327aa MW: 34309.1 Da PI: 9.7755 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2e-06 | 37 | 60 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H MDP0000217837 37 KSKPCTKFFSTAGCPFGESCHFLH 60 7789******************** PP | |||||||
2 | zf-CCCH | 20.8 | 7e-07 | 103 | 126 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C + Ck+Gd+C+FaHg+ MDP0000217837 103 RICTKYNSPEGCKFGDKCHFAHGE 126 66777777778***********96 PP | |||||||
3 | zf-CCCH | 36.3 | 9.1e-12 | 270 | 294 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++f + GtC +G+rC+FaHg MDP0000217837 270 YKTKLCDNFTK-GTCTFGERCHFAHG 294 9**********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.709 | 35 | 63 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.91 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-6 | 36 | 61 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-4 | 37 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.1E-8 | 37 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-12 | 96 | 131 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.056 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-7 | 100 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-5 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.17 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 4.68E-14 | 163 | 238 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 3.3E-16 | 167 | 238 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 2.1E-11 | 167 | 237 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 13.691 | 168 | 232 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.8E-10 | 170 | 234 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.32E-13 | 170 | 232 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-16 | 265 | 300 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-9 | 267 | 299 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.511 | 269 | 296 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.1E-8 | 269 | 295 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-9 | 270 | 294 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MDTRKRGRHE GGGFHSNGGF KKNKQELESF STGVGSKSKP CTKFFSTAGC PFGESCHFLH 60 YVPGGYNAVA QMMNLAPAPP PPRNIPGPPS HSNGSNSSGV KSRICTKYNS PEGCKFGDKC 120 HFAHGEWELG KPLAQXHDDP RAMGPGPGRM GNWMEPHLAG PASSFGASST AKISVDASHA 180 GAIIGKGGVH SKXICLRTGA KLSIRDHESN PNLRNIELEG TFEQIQQASA MVSELIATVS 240 TSGPGKAPGG GGGGGGGGGR GAPAPPRSNY KTKLCDNFTK GTCTFGERCH FAHGAAELRK 300 SGVCEWRLAT RSGSPPYKIW KAEAVQL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.11322 | 0.0 | bud| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008367363.2 | 1e-180 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-103 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A498IIY4 | 0.0 | A0A498IIY4_MALDO; Uncharacterized protein | ||||
STRING | XP_008387258.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 4e-57 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000217837 |