PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000217637

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

G2-like

Protein Properties

Length: 342aa MW: 38480.9 Da PI: 9.4032

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000217637	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.5	7.1e-29	104	153	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtp+LH++Fv+ave+LGG+++AtPk +l +m+vk+Lt++hvkSHLQ MDP0000217637 104 PRLRWTPDLHRCFVHAVERLGGEQRATPKMVLPIMNVKDLTISHVKSHLQ 153 8************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-27	100	153	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.09E-12	102	154	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-21	104	154	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MKDQAMKRVE GDDHHHQRSS SLKRSPSSSV DNGDQKPYTS SFDDGDGDGV TPMRSTTLGK 60 QLVVDGYPHH FPAAPSHRQM SGSLLKPSSX SSVPVRPYVR SKMPRLRWTP DLHRCFVHAV 120 ERLGGEQRAT PKMVLPIMNV KDLTISHVKS HLQVCDRGQL YRNMKHEQGI QAAAMAAKEN 180 GVFLVSEHSN NSIYLKXINI AQXVCHQKNX GVIKMYNYGP CQSNETCYIE DLATKNTSPQ 240 AKWKDETKPL VPYQVSSKRY EQKPNSFIIF NXLLKRCSDN IGQESNHKHL EDLRGTESEY 300 DARMFLSLNS SSTKAXRELL RLSKASGNSD ANDVSLELTL NT

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MKDQAMKRVE GDDHHHQRSS SLKRSPSSSV DNGDQKPYTS SFDDGDGDGV TPMRSTTLGK  60
QLVVDGYPHH FPAAPSHRQM SGSLLKPSSX SSVPVRPYVR SKMPRLRWTP DLHRCFVHAV  120
ERLGGEQRAT PKMVLPIMNV KDLTISHVKS HLQVCDRGQL YRNMKHEQGI QAAAMAAKEN  180
GVFLVSEHSN NSIYLKXINI AQXVCHQKNX GVIKMYNYGP CQSNETCYIE DLATKNTSPQ  240
AKWKDETKPL VPYQVSSKRY EQKPNSFIIF NXLLKRCSDN IGQESNHKHL EDLRGTESEY  300
DARMFLSLNS SSTKAXRELL RLSKASGNSD ANDVSLELTL NT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-15	105	153	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-15	105	153	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-15	105	153	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-15	105	153	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-15	105	153	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-15	105	153	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-15	105	153	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-15	105	153	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-15	105	153	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-15	105	153	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-15	105	153	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-15	105	153	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018502139.1	0.0	PREDICTED: uncharacterized protein LOC103944062
TrEMBL	A0A498JU65	0.0	A0A498JU65_MALDO; Uncharacterized protein
STRING	XP_008384248.1	1e-168	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9381	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	2e-24	G2-like family protein

Link Out ? help Back to Top
Phytozome	MDP0000217637