PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000217009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | NF-YB | ||||||||
Protein Properties | Length: 234aa MW: 23898.5 Da PI: 9.6865 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 150.5 | 3.3e-47 | 59 | 135 | 2 | 78 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfed 78 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe+ MDP0000217009 59 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEE 135 89*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.17E-32 | 38 | 134 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.3E-44 | 53 | 140 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.2E-28 | 64 | 128 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 9.1E-12 | 92 | 110 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 95 | 111 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 9.1E-12 | 111 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MRYYTARSNG XQRLSVSLSL XPLAPTTKPS ETAGMADSDN DSGGPNDRSQ AQSGELSARE 60 QDRFLPIANV SRIMKKALPA NAKISKDAKE TVQECVSEFI SFVTGEASDK CQREKRKTIN 120 GDDLLWAMTT LGFEEARRAL WGGGGGREKD SSSGGGGAAS GGGGGGGISS GISGGGYNGG 180 YGGMVMMGHH NHHQGHVRGS GGGYQQNHMA MGGGGGRKSG GSSGXGNGGA SVVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 1e-40 | 59 | 140 | 2 | 83 | Transcription factor HapC (Eurofung) |
4g92_B | 1e-40 | 59 | 140 | 2 | 83 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.14413 | 6e-93 | bud| fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC787663 | 9e-83 | KC787663.1 Brassica napus transcription factor subunit NF-YB3B (NF-YB3B) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008229927.1 | 1e-84 | PREDICTED: nuclear transcription factor Y subunit B-3-like | ||||
TrEMBL | A0A220D3B7 | 5e-82 | A0A220D3B7_MALDO; Nuclear transcription factor Y subunit B-2-like | ||||
STRING | XP_008357961.1 | 1e-84 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 1e-58 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000217009 |