PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000216521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | SBP | ||||||||
Protein Properties | Length: 249aa MW: 28386.8 Da PI: 5.3778 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 52.9 | 9.9e-17 | 200 | 238 | 38 | 76 |
EEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 38 leqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 ++ f qqC fh+l +fD++krsCrrrLa+hnerr+k+ MDP0000216521 200 STKGFGQQCRIFHQLPDFDDTKRSCRRRLAGHNERRKKN 238 6788*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 12.981 | 155 | 238 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.8E-13 | 195 | 242 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.3E-9 | 204 | 237 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 7.2E-5 | 204 | 225 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MAPVPNTRPN GDDEDPRPIK QPRLGEAEDS KEEKPKLKLD TDPMALDDQS PLVEVEDEPE 60 VWEGMITDET TDNQFLIHCH NVLLPYDHMY VHKRATRFQT NCCLPQVSIT LSLLVATSFQ 120 DLQYQAITRP EMDVISRTMM XSSNLNPNTL MFALLAYQTM ENFFAEWWAL RSSSSLSSNG 180 GEGGAMRRCQ ADRLCLFLAS TKGFGQQCRI FHQLPDFDDT KRSCRRRLAG HNERRKKNLA 240 ESHVVEGSC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 6e-14 | squamosa promoter binding protein-like 4 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000216521 |