PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000215679 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 763aa MW: 83531.9 Da PI: 5.3339 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.5 | 2.4e-08 | 69 | 96 | 1 | 27 |
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC+ff+r tC +G+ C++aHg+ MDP0000215679 69 WKTSLCSFFRREAkTCGHGSECRYAHGE 96 8**********99*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 4.91E-6 | 66 | 101 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-12 | 66 | 102 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.178 | 68 | 97 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.4E-4 | 68 | 96 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-6 | 69 | 96 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.70.330 | 1.5E-4 | 164 | 203 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
SuperFamily | SSF54928 | 2.58E-5 | 168 | 225 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS51687 | 27.634 | 256 | 763 | IPR010280 | (Uracil-5)-methyltransferase family |
SuperFamily | SSF53335 | 1.15E-9 | 258 | 284 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 1.15E-9 | 316 | 420 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 5.46E-13 | 528 | 566 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 1.1E-34 | 530 | 566 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 1.1E-34 | 640 | 703 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 5.46E-13 | 651 | 704 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF05958 | 5.3E-6 | 655 | 699 | IPR010280 | (Uracil-5)-methyltransferase family |
Gene3D | G3DSA:3.40.50.150 | 1.1E-34 | 738 | 763 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 5.46E-13 | 747 | 763 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006396 | Biological Process | RNA processing | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0008173 | Molecular Function | RNA methyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 763 aa Download sequence Send to blast |
MSSTPTPTAE PVTELLNPPS PLNGHGSXDQ PQPPQDPATQ PPDDVVSGDK RKREVNDDVQ 60 NPSAAPPLWK TSLCSFFRRE AKTCGHGSEC RYAHGEAELR PRPDNTWDPT SERAKKQKLE 120 EEIEECVALD NVMMTEAIDE DGDGGDAGGL DPELSKCLGV EFKSAKKKKG MALGFVXFEN 180 AEQLQNAVKD LEGISIGNKV MKVADVIPRS FEKRTKSIMA PQIPGVGLDG ENVEDSMTAN 240 GAEDGDGLNG RSARKVVTPL AHMSYDDQLE HKKSSLMQIL KRLTRNARKA CPDGIPLPEW 300 ILKSREIGGL PCSLEGIXAS PVVKGYRNKC EFSVGYSLRG KITVGFMLGN FREGVTAVEE 360 PFDCPNVSRI SSQYASIFQE FLQHSSLPIW NRFKNIGFWR QLTVREGRRP GIATDSEHCE 420 ANIAEVMLIV QVSSSGFDDX QITSEYERLA QAFPAGAAAS SPSLPLTFLV IQDHQGISNA 480 APADAPLRSL SIPKAEGGSX XQSADNVVEP KIHDYINNLK FCISPTAFFQ VVGIEMNASA 540 VSDARRNAEI NDIKNCRFVC AKAEDVMRSL LEEYXIAPQK QDDHVXEGSD KVIVTEGEKA 600 ISVDNKPNPE ESSSHELDTA SEGLEIDKQE VRSQPQSSCT SEKGKTPVKC FSNVVAIVDP 660 PXNGLHPTVI KALRTHADLX KLVYISCNPE TLVANAIELC TPSPEKIDKN KNNRAWRNMG 720 SAGLARHRTK SMPASEPFRP VKAMAVDIFP HTVHCELVML LER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.8026 | 0.0 | leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008385306.2 | 0.0 | zinc finger CCCH domain-containing protein 24-like | ||||
Swissprot | Q8L7S3 | 0.0 | C3H24_ARATH; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A498IKG6 | 0.0 | A0A498IKG6_MALDO; Uncharacterized protein | ||||
STRING | XP_009335076.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8854 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28450.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000215679 |
Publications ? help Back to Top | |||
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