PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000215679
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 763aa    MW: 83531.9 Da    PI: 5.3339
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000215679genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.4e-086996127
                   --S---SGGGGTS.--TTTTT-SS-SSS CS
        zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHgp 27
                   +kt+lC+ff+r   tC +G+ C++aHg+
  MDP0000215679 69 WKTSLCSFFRREAkTCGHGSECRYAHGE 96
                   8**********99*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.91E-666101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-1266102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1786897IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-46896IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-66996IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3301.5E-4164203IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549282.58E-5168225IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168727.634256763IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.15E-9258284IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.15E-9316420IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533355.46E-13528566IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.1E-34530566IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.1E-34640703IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533355.46E-13651704IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059585.3E-6655699IPR010280(Uracil-5)-methyltransferase family
Gene3DG3DSA:3.40.50.1501.1E-34738763IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533355.46E-13747763IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MSSTPTPTAE PVTELLNPPS PLNGHGSXDQ PQPPQDPATQ PPDDVVSGDK RKREVNDDVQ  60
NPSAAPPLWK TSLCSFFRRE AKTCGHGSEC RYAHGEAELR PRPDNTWDPT SERAKKQKLE  120
EEIEECVALD NVMMTEAIDE DGDGGDAGGL DPELSKCLGV EFKSAKKKKG MALGFVXFEN  180
AEQLQNAVKD LEGISIGNKV MKVADVIPRS FEKRTKSIMA PQIPGVGLDG ENVEDSMTAN  240
GAEDGDGLNG RSARKVVTPL AHMSYDDQLE HKKSSLMQIL KRLTRNARKA CPDGIPLPEW  300
ILKSREIGGL PCSLEGIXAS PVVKGYRNKC EFSVGYSLRG KITVGFMLGN FREGVTAVEE  360
PFDCPNVSRI SSQYASIFQE FLQHSSLPIW NRFKNIGFWR QLTVREGRRP GIATDSEHCE  420
ANIAEVMLIV QVSSSGFDDX QITSEYERLA QAFPAGAAAS SPSLPLTFLV IQDHQGISNA  480
APADAPLRSL SIPKAEGGSX XQSADNVVEP KIHDYINNLK FCISPTAFFQ VVGIEMNASA  540
VSDARRNAEI NDIKNCRFVC AKAEDVMRSL LEEYXIAPQK QDDHVXEGSD KVIVTEGEKA  600
ISVDNKPNPE ESSSHELDTA SEGLEIDKQE VRSQPQSSCT SEKGKTPVKC FSNVVAIVDP  660
PXNGLHPTVI KALRTHADLX KLVYISCNPE TLVANAIELC TPSPEKIDKN KNNRAWRNMG  720
SAGLARHRTK SMPASEPFRP VKAMAVDIFP HTVHCELVML LER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.80260.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008385306.20.0zinc finger CCCH domain-containing protein 24-like
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A498IKG60.0A0A498IKG6_MALDO; Uncharacterized protein
STRINGXP_009335076.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]