PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000215583
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRF
Protein Properties Length: 679aa    MW: 73385.2 Da    PI: 7.1117
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000215583genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.42.9e-24215259145
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                    d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  MDP0000215583 215 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 259
                    79****************************************985 PP
2QLQ59.68.9e-21149185137
            QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                    ++FT++Q+ +L++Q+l+yKy+ +n+PvP++Ll +i+k
  MDP0000215583 149 GPFTPSQWIELEHQALIYKYMTSNVPVPSNLLIPIKK 185
                    59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.7E-12149185IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.966150185IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-14150183IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.287215259IPR014977WRC domain
PfamPF088799.0E-21216258IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MDFGVMGLEG LVGPDAGGGE AAENVGDGSG SASAKQQRSW PAEDDWRDSK MLKNEDLNSP  60
KTMPLQYQGT PLLRSNSQLL PPPAESHRQE QMLSFSNNKS ESFLNRDRDF AYYQRNPTPI  120
PSPYPRNAGS PGYGSLNLSM HGTFTGARGP FTPSQWIELE HQALIYKYMT SNVPVPSNLL  180
IPIKKSLYPY GLSGPSNPTS IAWGAYHLGF SGNNDPEPGR CRRTDGKKWR CSRDAVADQK  240
YCERHINRGR HRSRKPVEGQ PGQAVSGTSN SKRVPMNSSM STSVMPSSGV SSSLTTAQQQ  300
FKSLQPAVAV NPSADAFVNR MQGQQGVSVM SAPTLKPKSN KSTYNIGKQE FLVEEASQAE  360
FGLVSTDSLL NPSHRNSYIS KDFSGSFLHF GDQDTQDHHP LRQFMDDWPK DQSCHSVSTW  420
PEEVKSDWTQ LSMSIPMASS EFSSSSSSPK HEKLALSPLR LSREFEPAQM NLGISNDISE  480
SSQKQTNWIP IAWGNSMGGP LGEVLTKTTS GGSKICINSK SPLGLLNEGW DGSPQLGSSP  540
TGVLQKSTFC SLSNSSSGSS PRGGENKKSS LDXASIYDDV PGSTFASSSV PSLIVESYSS  600
SEEDLCPETL KTVGTKAIAV SDVIKSENGK XRFGSSLALR QGALLWAVNP TCSTSVWLLG  660
YGPGITECGD LPPLNLTLI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.90280.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0561591e-84EU056159.1 Eriobotrya japonica clone ssrEJ102 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342096.20.0growth-regulating factor 1 isoform X1
TrEMBLA0A498KH580.0A0A498KH58_MALDO; Uncharacterized protein
STRINGXP_008342096.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-108growth-regulating factor 1