PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000214403
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 739aa    MW: 81984.1 Da    PI: 6.406
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000214403genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.6e-08242263426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    ++C +far G+Ck G++CkF Hg
  MDP0000214403 242 KPCLYFAR-GFCKNGNNCKFVHG 263
                    69******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.033238265IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-4240264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5241263IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5242263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4242263IPR000571Zinc finger, CCCH-type
CDDcd124582.10E-31370492No hitNo description
SuperFamilySSF549285.67E-9443516IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3307.0E-6443498IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MGSYELTNVL FSKIKTLDPE NAIKIMGYLL IQDFAEKDLI RLAYGPETLL HSLILRAXIQ  60
LGLLANSSSA SSTPSSPSPL NPIARPTNGN PFSQSSPRIP NGFDFGKTPS SPSSNSWPLS  120
GFPSNSVSPK ASPXLSYDNI RAGSFSLPVH SHQFSKDGGG DGWPGSDLIE EHQLNEYLSF  180
LNESSSSSXP EDFIDPRLEL GHGVPDWAHS VNNGDTHFHR RSYSASDACL XSEDPALGVG  240
FKPCLYFARG FCKNGNNCKF VHGDFXDSDG SGAIVGSPSN LDGFEQHEEM MRLKAQQQRL  300
AAASQFMAGA SPSSYNKYMN FLLQQQNDPQ RVAAMMMGEE LYKFGRCRPD RNELLAMASV  360
EKASSASRQI YLTFPAESTF RDEDVSEYFR SLFVNLSNNF ANLLLLGISW YNLVQENFLE  420
NKKYKFLTWK EREYGVIKIK PKNKFGPVQD VRIPYQQKRM FGFVTFVYPE TVRLILSKGN  480
PHFICDSRVL VKPYKEKGKI LDKRQQQQQH LERGEFSPCL XPGGLDSRDP YDLPLGGRMF  540
YNTQEMLLRR KLEEQVELQQ AIELQGRRLM SLQLPDWKND RLPHHHRSLS VGAHGPPLSP  600
HSHAQINQNI LPFDSTEQEV AEDHXDTPAA SISVTGAVAE LQQLQMEDNL AFIHNNVNGN  660
GNGKDKEQGS NLDAPNLHKI VEQVLPDSLF ASPTNSAGDH LSALSTAVPK VNDTAITTET  720
NTSSSSSSSV NAAGFIASH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.223730.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028944629.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 55
TrEMBLA0A498IP860.0A0A498IP86_MALDO; Uncharacterized protein
STRINGXP_008385746.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66967