PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000210138
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 440aa    MW: 48077.8 Da    PI: 8.8017
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000210138genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP673.9e-2196147253
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETT CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhels 53 
                    C v+gC+ dls++++yhrrhkvCe hsk+p+v+++g +qrfCqqCs   ++s
  MDP0000210138  96 CLVDGCNCDLSTCRDYHRRHKVCELHSKTPQVTINGNKQRFCQQCSSSVRMS 147
                    **********************************************766665 PP
2SBP48.42.5e-151672004578
                    TTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP  45 qCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C rfh+l+efD++krsCr+rL++hn+rrrk+q+
  MDP0000210138 167 FCCRFHALEEFDQGKRSCRKRLDGHNRRRRKPQP 200
                    499****************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.3E-2889185IPR004333Transcription factor, SBP-box
PROSITE profilePS511412593198IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.5E-2094145IPR004333Transcription factor, SBP-box
PfamPF031101.0E-1596142IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.72E-13168203IPR004333Transcription factor, SBP-box
PfamPF031103.5E-8168197IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDWNLKAXSW DLSELEQETF SNMDTTVDGS SSLGDHRALK GSNFSVDLKL GQLGGYGNNE  60
XVDMLKEPVP RTTSSSSSVP SKRSRAAYSG SQMVSCLVDG CNCDLSTCRD YHRRHKVCEL  120
HSKTPQVTIN GNKQRFCQQC SSSVRMSTLC SKPQSGKVKF LTLRALFCCR FHALEEFDQG  180
KRSCRKRLDG HNRRRRKPQP EPLSHPGSFM SSYQGTPRLL PLSSTLVYPS TNIINPTWAG  240
IVKTEPDSGT HNSQLPLIDK QNMFLGSSGS TSSSGYKGGK XFSLFQSSNS SPVHHNHQTS  300
HHHSASVCQP LLNTISFSET GGGGGGGTTK SKTFCDRLTT QTHDSDCALS LLSSPQTQQR  360
SEIGLRHIVQ QPNSVSLMQQ RFGPAGLHGN SSSIEPMDSV LVPNGSGDAN VHCPGMFHIG  420
SQSSGNQHHQ SPQTPPFHWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A5e-1594178460squamosa promoter-binding protein-like 12
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180197KRSCRKRLDGHNRRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.136050.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359410.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
RefseqXP_009359411.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
TrEMBLA0A498I6Z60.0A0A498I6Z6_MALDO; Uncharacterized protein
STRINGXP_008392795.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-57SBP family protein